Cluster: Rep_2488_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2488
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2488_c_13 | Rep_2488_c_13_29 | 28382 | 29266 | - | GH43_17 |
| pfam | Rep_2488_c_13 | Rep_2488_c_13_30 | 29259 | 29537 | - | DUF6171 |
| CAZyme | Rep_2488_c_13 | Rep_2488_c_13_31 | 29537 | 31006 | - | GH51_1 |
| pfam | Rep_2488_c_13 | Rep_2488_c_13_32 | 31098 | 31730 | - | Pentapeptide | Pentapeptide | Pentapeptide | Pentapeptide | Pentapeptide | Pentapeptide_4 | Pentapeptide_4 | Pentapeptide_4 |
| TC | Rep_2488_c_13 | Rep_2488_c_13_33 | 31907 | 32929 | + | 2.A.56.1.5 |
| TC | Rep_2488_c_13 | Rep_2488_c_13_34 | 32931 | 33419 | + | 2.A.56.1.5 |
| TC | Rep_2488_c_13 | Rep_2488_c_13_35 | 33416 | 34714 | + | 2.A.56.1.5 |
| CAZyme | Rep_2488_c_13 | Rep_2488_c_13_36 | 34966 | 35838 | + | GH43 |
| CAZyme | Rep_2488_c_13 | Rep_2488_c_13_37 | 35835 | 39053 | + | GH43 |
| pfam | Rep_2488_c_13 | Rep_2488_c_13_38 | 39133 | 39570 | - | Acetyltransf_1 | FR47 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | Rep_2488_c_13 | Rep_2488_c_13_39 | 39584 | 40681 | - | GH88 |
Gene ID: Rep_2488_c_13_29
Type: CAZyme
Location: 28382 - 29266 (-)
Type: CAZyme
Location: 28382 - 29266 (-)
Gene ID: Rep_2488_c_13_30
Type: pfam
Location: 29259 - 29537 (-)
Type: pfam
Location: 29259 - 29537 (-)
Gene ID: Rep_2488_c_13_31
Type: CAZyme
Location: 29537 - 31006 (-)
Type: CAZyme
Location: 29537 - 31006 (-)
Gene ID: Rep_2488_c_13_32
Type: pfam
Location: 31098 - 31730 (-)
Type: pfam
Location: 31098 - 31730 (-)
Gene ID: Rep_2488_c_13_33
Type: TC
Location: 31907 - 32929 (+)
Type: TC
Location: 31907 - 32929 (+)
Gene ID: Rep_2488_c_13_34
Type: TC
Location: 32931 - 33419 (+)
Type: TC
Location: 32931 - 33419 (+)
Gene ID: Rep_2488_c_13_35
Type: TC
Location: 33416 - 34714 (+)
Type: TC
Location: 33416 - 34714 (+)
Gene ID: Rep_2488_c_13_36
Type: CAZyme
Location: 34966 - 35838 (+)
Type: CAZyme
Location: 34966 - 35838 (+)
Gene ID: Rep_2488_c_13_37
Type: CAZyme
Location: 35835 - 39053 (+)
Type: CAZyme
Location: 35835 - 39053 (+)
Gene ID: Rep_2488_c_13_38
Type: pfam
Location: 39133 - 39570 (-)
Type: pfam
Location: 39133 - 39570 (-)
Gene ID: Rep_2488_c_13_39
Type: CAZyme
Location: 39584 - 40681 (-)
Type: CAZyme
Location: 39584 - 40681 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
HGM11530
Species
HGM11530 sp900751685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.