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Cluster: Rep_2471_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2471_c_140 Rep_2471_c_140_17 18875 19744 + 3.A.1.3.27
TC Rep_2471_c_140 Rep_2471_c_140_18 19805 20500 + 3.A.1.3.15
TC Rep_2471_c_140 Rep_2471_c_140_19 20490 21758 + 3.A.1.3.25
peptidase Rep_2471_c_140 Rep_2471_c_140_20 21841 22908 - S09.UPW
pfam Rep_2471_c_140 Rep_2471_c_140_21 22960 24450 - DUF2779
CAZyme Rep_2471_c_140 Rep_2471_c_140_22 24598 25503 - GH43_17
CAZyme Rep_2471_c_140 Rep_2471_c_140_23 25784 27943 + GH2
TC Rep_2471_c_140 Rep_2471_c_140_24 27968 29461 + 2.A.2.3.1
TC Rep_2471_c_140 Rep_2471_c_140_25 29501 30565 + 2.A.7.3.59
Gene ID: Rep_2471_c_140_17
Type: TC
Location: 18875 - 19744 (+)
Gene ID: Rep_2471_c_140_18
Type: TC
Location: 19805 - 20500 (+)
Gene ID: Rep_2471_c_140_19
Type: TC
Location: 20490 - 21758 (+)
Gene ID: Rep_2471_c_140_20
Type: peptidase
Location: 21841 - 22908 (-)
Gene ID: Rep_2471_c_140_21
Type: pfam
Location: 22960 - 24450 (-)
Gene ID: Rep_2471_c_140_22
Type: CAZyme
Location: 24598 - 25503 (-)
Gene ID: Rep_2471_c_140_23
Type: CAZyme
Location: 25784 - 27943 (+)
Gene ID: Rep_2471_c_140_24
Type: TC
Location: 27968 - 29461 (+)
Gene ID: Rep_2471_c_140_25
Type: TC
Location: 29501 - 30565 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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