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Cluster: Rep_2463_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2463_c_23 Rep_2463_c_23_5 3468 4925 + 3.A.1.11.8
TC Rep_2463_c_23 Rep_2463_c_23_6 4918 5709 + 3.A.1.11.8
TC Rep_2463_c_23 Rep_2463_c_23_7 5706 6530 + 3.A.1.11.8
STP Rep_2463_c_23 Rep_2463_c_23_8 6527 8170 + SBP_bac_1
CAZyme Rep_2463_c_23 Rep_2463_c_23_9 8518 10053 + GH20
pfam Rep_2463_c_23 Rep_2463_c_23_10 10238 11209 + PFK
TC Rep_2463_c_23 Rep_2463_c_23_11 11486 13264 + 3.A.1.106.8
TC Rep_2463_c_23 Rep_2463_c_23_12 13266 15170 + 3.A.1.135.5
Gene ID: Rep_2463_c_23_5
Type: TC
Location: 3468 - 4925 (+)
Gene ID: Rep_2463_c_23_6
Type: TC
Location: 4918 - 5709 (+)
Gene ID: Rep_2463_c_23_7
Type: TC
Location: 5706 - 6530 (+)
Gene ID: Rep_2463_c_23_8
Type: STP
Location: 6527 - 8170 (+)
Gene ID: Rep_2463_c_23_9
Type: CAZyme
Location: 8518 - 10053 (+)
Gene ID: Rep_2463_c_23_10
Type: pfam
Location: 10238 - 11209 (+)
Gene ID: Rep_2463_c_23_11
Type: TC
Location: 11486 - 13264 (+)
Gene ID: Rep_2463_c_23_12
Type: TC
Location: 13266 - 15170 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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