Cluster: Rep_2462_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2462
- CGC Family ID: CGCFAM_09043
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2462_c_16 | Rep_2462_c_16_2 | 1040 | 2509 | + | 3.A.1.11.8 |
| TC | Rep_2462_c_16 | Rep_2462_c_16_3 | 2496 | 3269 | + | 3.A.1.11.1 |
| TC | Rep_2462_c_16 | Rep_2462_c_16_4 | 3266 | 4066 | + | 3.A.1.11.2 |
| TC | Rep_2462_c_16 | Rep_2462_c_16_5 | 4122 | 5348 | + | 3.A.1.11.7 |
| TC | Rep_2462_c_16 | Rep_2462_c_16_6 | 5443 | 7998 | - | 3.A.1.122.2 |
| CAZyme | Rep_2462_c_16 | Rep_2462_c_16_7 | 8156 | 9718 | + | GH20 |
Gene ID: Rep_2462_c_16_2
Type: TC
Location: 1040 - 2509 (+)
Type: TC
Location: 1040 - 2509 (+)
Gene ID: Rep_2462_c_16_3
Type: TC
Location: 2496 - 3269 (+)
Type: TC
Location: 2496 - 3269 (+)
Gene ID: Rep_2462_c_16_4
Type: TC
Location: 3266 - 4066 (+)
Type: TC
Location: 3266 - 4066 (+)
Gene ID: Rep_2462_c_16_5
Type: TC
Location: 4122 - 5348 (+)
Type: TC
Location: 4122 - 5348 (+)
Gene ID: Rep_2462_c_16_6
Type: TC
Location: 5443 - 7998 (-)
Type: TC
Location: 5443 - 7998 (-)
Gene ID: Rep_2462_c_16_7
Type: CAZyme
Location: 8156 - 9718 (+)
Type: CAZyme
Location: 8156 - 9718 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-314
Genus
Limihabitans
Species
Limihabitans stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.