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Cluster: Rep_2462_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2462_c_41 Rep_2462_c_41_17 22125 22943 - 3.A.1.3.15
TC Rep_2462_c_41 Rep_2462_c_41_18 22930 23616 - 3.A.1.3.14
TC Rep_2462_c_41 Rep_2462_c_41_19 23647 24435 - 3.A.1.3.2
TC Rep_2462_c_41 Rep_2462_c_41_20 24774 25592 - 1.A.16.1.3
pfam Rep_2462_c_41 Rep_2462_c_41_21 25928 27658 + Flg_new
TF Rep_2462_c_41 Rep_2462_c_41_22 27743 28546 - LacI
CAZyme Rep_2462_c_41 Rep_2462_c_41_23 28607 30295 + CBM34 | GH13_20
STP Rep_2462_c_41 Rep_2462_c_41_24 30292 31698 + SBP_bac_1
TC Rep_2462_c_41 Rep_2462_c_41_25 31711 33060 + 3.A.1.1.27
TC Rep_2462_c_41 Rep_2462_c_41_26 33057 33896 + 3.A.1.1.27
Gene ID: Rep_2462_c_41_17
Type: TC
Location: 22125 - 22943 (-)
Gene ID: Rep_2462_c_41_18
Type: TC
Location: 22930 - 23616 (-)
Gene ID: Rep_2462_c_41_19
Type: TC
Location: 23647 - 24435 (-)
Gene ID: Rep_2462_c_41_20
Type: TC
Location: 24774 - 25592 (-)
Gene ID: Rep_2462_c_41_21
Type: pfam
Location: 25928 - 27658 (+)
Gene ID: Rep_2462_c_41_22
Type: TF
Location: 27743 - 28546 (-)
Gene ID: Rep_2462_c_41_23
Type: CAZyme
Location: 28607 - 30295 (+)
Gene ID: Rep_2462_c_41_24
Type: STP
Location: 30292 - 31698 (+)
Gene ID: Rep_2462_c_41_25
Type: TC
Location: 31711 - 33060 (+)
Gene ID: Rep_2462_c_41_26
Type: TC
Location: 33057 - 33896 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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