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Cluster: Rep_2462_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2462_c_33 Rep_2462_c_33_13 13100 14770 - 2.A.58.2.2
peptidase Rep_2462_c_33 Rep_2462_c_33_14 15060 15887 - S09.UPW
TC Rep_2462_c_33 Rep_2462_c_33_15 15898 16995 - 2.A.45.2.6
pfam Rep_2462_c_33 Rep_2462_c_33_16 17137 17688 - Isochorismatase
NULL(UNKNOWN) Rep_2462_c_33 Rep_2462_c_33_17 17903 18130 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2462_c_33 Rep_2462_c_33_18 18358 20385 - 3.A.1.1.26
CAZyme Rep_2462_c_33 Rep_2462_c_33_19 20397 23285 - GH13_14
TC Rep_2462_c_33 Rep_2462_c_33_20 23296 24201 - 3.A.1.1.27
TC Rep_2462_c_33 Rep_2462_c_33_21 24201 25688 - 3.A.1.1.27
Gene ID: Rep_2462_c_33_13
Type: TC
Location: 13100 - 14770 (-)
Gene ID: Rep_2462_c_33_14
Type: peptidase
Location: 15060 - 15887 (-)
Gene ID: Rep_2462_c_33_15
Type: TC
Location: 15898 - 16995 (-)
Gene ID: Rep_2462_c_33_16
Type: pfam
Location: 17137 - 17688 (-)
Gene ID: Rep_2462_c_33_17
Type:
Location: 17903 - 18130 (+)
Gene ID: Rep_2462_c_33_18
Type: TC
Location: 18358 - 20385 (-)
Gene ID: Rep_2462_c_33_19
Type: CAZyme
Location: 20397 - 23285 (-)
Gene ID: Rep_2462_c_33_20
Type: TC
Location: 23296 - 24201 (-)
Gene ID: Rep_2462_c_33_21
Type: TC
Location: 24201 - 25688 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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