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Cluster: Rep_2443_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2443_c_20 Rep_2443_c_20_23 19677 20441 - CE4
pfam Rep_2443_c_20 Rep_2443_c_20_24 20644 23022 - DNA_topoisoIV | DNA_gyraseA_C | DNA_gyraseA_C | DNA_gyraseA_C
STP Rep_2443_c_20 Rep_2443_c_20_25 23025 24971 - HATPase_c
CAZyme Rep_2443_c_20 Rep_2443_c_20_26 25122 26159 + GT28
TC Rep_2443_c_20 Rep_2443_c_20_27 26139 27284 - 2.A.7.3.49
NULL(UNKNOWN) Rep_2443_c_20 Rep_2443_c_20_28 27281 27580 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2443_c_20 Rep_2443_c_20_29 27674 28051 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2443_c_20 Rep_2443_c_20_30 28048 28713 - 3.A.1.23.5
Gene ID: Rep_2443_c_20_23
Type: CAZyme
Location: 19677 - 20441 (-)
Gene ID: Rep_2443_c_20_24
Type: pfam
Location: 20644 - 23022 (-)
Gene ID: Rep_2443_c_20_25
Type: STP
Location: 23025 - 24971 (-)
Gene ID: Rep_2443_c_20_26
Type: CAZyme
Location: 25122 - 26159 (+)
Gene ID: Rep_2443_c_20_27
Type: TC
Location: 26139 - 27284 (-)
Gene ID: Rep_2443_c_20_28
Type:
Location: 27281 - 27580 (-)
Gene ID: Rep_2443_c_20_29
Type:
Location: 27674 - 28051 (+)
Gene ID: Rep_2443_c_20_30
Type: TC
Location: 28048 - 28713 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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