Cluster: Rep_242_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_242
- CGC Family ID: CGCFAM_06016
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_242_c_254 | Rep_242_c_254_8 | 8920 | 10077 | + | CE19 |
| pfam | Rep_242_c_254 | Rep_242_c_254_9 | 10271 | 12115 | + | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| NULL(UNKNOWN) | Rep_242_c_254 | Rep_242_c_254_10 | 12202 | 12618 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_242_c_254 | Rep_242_c_254_11 | 12676 | 14052 | + | 2.A.66.1.33 |
| pfam | Rep_242_c_254 | Rep_242_c_254_12 | 14167 | 15984 | + | tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1 |
| pfam | Rep_242_c_254 | Rep_242_c_254_13 | 16076 | 16600 | + | RNase_H |
| CAZyme | Rep_242_c_254 | Rep_242_c_254_14 | 16906 | 17763 | - | GT2 |
Gene ID: Rep_242_c_254_8
Type: CAZyme
Location: 8920 - 10077 (+)
Type: CAZyme
Location: 8920 - 10077 (+)
Gene ID: Rep_242_c_254_9
Type: pfam
Location: 10271 - 12115 (+)
Type: pfam
Location: 10271 - 12115 (+)
Gene ID: Rep_242_c_254_10
Type:
Location: 12202 - 12618 (+)
Type:
Location: 12202 - 12618 (+)
Gene ID: Rep_242_c_254_11
Type: TC
Location: 12676 - 14052 (+)
Type: TC
Location: 12676 - 14052 (+)
Gene ID: Rep_242_c_254_12
Type: pfam
Location: 14167 - 15984 (+)
Type: pfam
Location: 14167 - 15984 (+)
Gene ID: Rep_242_c_254_13
Type: pfam
Location: 16076 - 16600 (+)
Type: pfam
Location: 16076 - 16600 (+)
Gene ID: Rep_242_c_254_14
Type: CAZyme
Location: 16906 - 17763 (-)
Type: CAZyme
Location: 16906 - 17763 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.