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Cluster: Rep_240_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_240_c_34 Rep_240_c_34_5 8305 9870 + 3.B.1.1.2
NULL(UNKNOWN) Rep_240_c_34 Rep_240_c_34_6 9990 10139 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_240_c_34 Rep_240_c_34_7 10145 10573 + Biotin_lipoyl | Biotin_lipoyl_2
CAZyme Rep_240_c_34 Rep_240_c_34_8 10749 11558 + GT5
pfam Rep_240_c_34 Rep_240_c_34_9 11644 13098 + DUF4270
NULL(UNKNOWN) Rep_240_c_34 Rep_240_c_34_10 13098 13274 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_240_c_34 Rep_240_c_34_11 13672 14088 - 2.A.7.2.1
pfam Rep_240_c_34 Rep_240_c_34_12 14884 17505 - UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor
CAZyme Rep_240_c_34 Rep_240_c_34_13 17536 18249 - GT51
TC Rep_240_c_34 Rep_240_c_34_14 18415 19113 - 9.B.186.1.3
Gene ID: Rep_240_c_34_5
Type: TC
Location: 8305 - 9870 (+)
Gene ID: Rep_240_c_34_6
Type:
Location: 9990 - 10139 (+)
Gene ID: Rep_240_c_34_7
Type: pfam
Location: 10145 - 10573 (+)
Gene ID: Rep_240_c_34_8
Type: CAZyme
Location: 10749 - 11558 (+)
Gene ID: Rep_240_c_34_9
Type: pfam
Location: 11644 - 13098 (+)
Gene ID: Rep_240_c_34_10
Type:
Location: 13098 - 13274 (+)
Gene ID: Rep_240_c_34_11
Type: TC
Location: 13672 - 14088 (-)
Gene ID: Rep_240_c_34_12
Type: pfam
Location: 14884 - 17505 (-)
Gene ID: Rep_240_c_34_13
Type: CAZyme
Location: 17536 - 18249 (-)
Gene ID: Rep_240_c_34_14
Type: TC
Location: 18415 - 19113 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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