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Cluster: Rep_240_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_240_c_146 Rep_240_c_146_18 15076 16659 + 3.A.2.1.3
TC Rep_240_c_146 Rep_240_c_146_19 16678 17649 + 3.A.2.1.7
TC Rep_240_c_146 Rep_240_c_146_20 17900 20488 + 3.A.9.1.2
CAZyme Rep_240_c_146 Rep_240_c_146_21 20709 23030 - GH3
NULL(UNKNOWN) Rep_240_c_146 Rep_240_c_146_22 23044 24297 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_240_c_146 Rep_240_c_146_23 24324 25994 - 8.A.46.2.2
TC Rep_240_c_146 Rep_240_c_146_24 26011 29202 - 1.B.14.6.2
CAZyme Rep_240_c_146 Rep_240_c_146_25 29217 30029 - GH16_3
Gene ID: Rep_240_c_146_18
Type: TC
Location: 15076 - 16659 (+)
Gene ID: Rep_240_c_146_19
Type: TC
Location: 16678 - 17649 (+)
Gene ID: Rep_240_c_146_20
Type: TC
Location: 17900 - 20488 (+)
Gene ID: Rep_240_c_146_21
Type: CAZyme
Location: 20709 - 23030 (-)
Gene ID: Rep_240_c_146_22
Type:
Location: 23044 - 24297 (-)
Gene ID: Rep_240_c_146_23
Type: TC
Location: 24324 - 25994 (-)
Gene ID: Rep_240_c_146_24
Type: TC
Location: 26011 - 29202 (-)
Gene ID: Rep_240_c_146_25
Type: CAZyme
Location: 29217 - 30029 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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