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Cluster: Rep_240_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_240_c_138 Rep_240_c_138_4 3067 6183 + 2.A.6.1.5
pfam Rep_240_c_138 Rep_240_c_138_5 6180 7349 + OEP | OEP
pfam Rep_240_c_138 Rep_240_c_138_6 7437 8402 - PDDEXK_13 | REase-ARP
TC Rep_240_c_138 Rep_240_c_138_7 8981 10399 + 2.A.66.1.7
STP Rep_240_c_138 Rep_240_c_138_8 10545 11141 + cNMP_binding
CAZyme Rep_240_c_138 Rep_240_c_138_9 11434 12996 + GT83
TF Rep_240_c_138 Rep_240_c_138_10 13312 13674 + Pencillinase_R
peptidase Rep_240_c_138 Rep_240_c_138_11 13921 15546 + M56.UPW
CAZyme Rep_240_c_138 Rep_240_c_138_12 17115 18035 - GT2
Gene ID: Rep_240_c_138_4
Type: TC
Location: 3067 - 6183 (+)
Gene ID: Rep_240_c_138_5
Type: pfam
Location: 6180 - 7349 (+)
Gene ID: Rep_240_c_138_6
Type: pfam
Location: 7437 - 8402 (-)
Gene ID: Rep_240_c_138_7
Type: TC
Location: 8981 - 10399 (+)
Gene ID: Rep_240_c_138_8
Type: STP
Location: 10545 - 11141 (+)
Gene ID: Rep_240_c_138_9
Type: CAZyme
Location: 11434 - 12996 (+)
Gene ID: Rep_240_c_138_10
Type: TF
Location: 13312 - 13674 (+)
Gene ID: Rep_240_c_138_11
Type: peptidase
Location: 13921 - 15546 (+)
Gene ID: Rep_240_c_138_12
Type: CAZyme
Location: 17115 - 18035 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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