Cluster: Rep_240_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_240
- CGC Family ID: CGCFAM_00468
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_240_c_50 | Rep_240_c_50_15 | 17978 | 19285 | + | 2.A.35.1.5 |
| NULL(UNKNOWN) | Rep_240_c_50 | Rep_240_c_50_16 | 19333 | 20127 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_240_c_50 | Rep_240_c_50_17 | 20218 | 20913 | + | GH25 |
| pfam | Rep_240_c_50 | Rep_240_c_50_18 | 20970 | 22157 | + | DZR | Zn_Ribbon_1 |
| TC | Rep_240_c_50 | Rep_240_c_50_19 | 22325 | 23581 | - | 9.A.40.1.2 |
Gene ID: Rep_240_c_50_15
Type: TC
Location: 17978 - 19285 (+)
Type: TC
Location: 17978 - 19285 (+)
Gene ID: Rep_240_c_50_16
Type:
Location: 19333 - 20127 (+)
Type:
Location: 19333 - 20127 (+)
Gene ID: Rep_240_c_50_17
Type: CAZyme
Location: 20218 - 20913 (+)
Type: CAZyme
Location: 20218 - 20913 (+)
Gene ID: Rep_240_c_50_18
Type: pfam
Location: 20970 - 22157 (+)
Type: pfam
Location: 20970 - 22157 (+)
Gene ID: Rep_240_c_50_19
Type: TC
Location: 22325 - 23581 (-)
Type: TC
Location: 22325 - 23581 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000431975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.