Cluster: Rep_2402_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2402
- CGC Family ID: CGCFAM_09377
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2402_c_30 | Rep_2402_c_30_51 | 49905 | 52127 | + | 3.A.7.16.1 |
| TC | Rep_2402_c_30 | Rep_2402_c_30_52 | 52202 | 52903 | + | 3.A.11.1.4 |
| NULL(UNKNOWN) | Rep_2402_c_30 | Rep_2402_c_30_53 | 52916 | 53332 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2402_c_30 | Rep_2402_c_30_54 | 53351 | 54340 | + | LacI |
| CAZyme | Rep_2402_c_30 | Rep_2402_c_30_55 | 54537 | 56804 | + | GT35 |
| CAZyme | Rep_2402_c_30 | Rep_2402_c_30_56 | 57196 | 58602 | + | GH13_28 |
Gene ID: Rep_2402_c_30_51
Type: TC
Location: 49905 - 52127 (+)
Type: TC
Location: 49905 - 52127 (+)
Gene ID: Rep_2402_c_30_52
Type: TC
Location: 52202 - 52903 (+)
Type: TC
Location: 52202 - 52903 (+)
Gene ID: Rep_2402_c_30_53
Type:
Location: 52916 - 53332 (+)
Type:
Location: 52916 - 53332 (+)
Gene ID: Rep_2402_c_30_54
Type: TF
Location: 53351 - 54340 (+)
Type: TF
Location: 53351 - 54340 (+)
Gene ID: Rep_2402_c_30_55
Type: CAZyme
Location: 54537 - 56804 (+)
Type: CAZyme
Location: 54537 - 56804 (+)
Gene ID: Rep_2402_c_30_56
Type: CAZyme
Location: 57196 - 58602 (+)
Type: CAZyme
Location: 57196 - 58602 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
RUG11237
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.