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Cluster: Rep_2402_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2402_c_30 Rep_2402_c_30_4 2663 3649 + 9.B.18.2.1
pfam Rep_2402_c_30 Rep_2402_c_30_5 3668 4846 + DUF3880 | Glyco_trans_1_2
CAZyme Rep_2402_c_30 Rep_2402_c_30_6 4858 5871 + GT101
pfam Rep_2402_c_30 Rep_2402_c_30_7 5899 7551 + MptE-like
CAZyme Rep_2402_c_30 Rep_2402_c_30_8 7548 8354 + GT2
NULL(UNKNOWN) Rep_2402_c_30 Rep_2402_c_30_9 8404 8520 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2402_c_30 Rep_2402_c_30_10 8543 9538 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2402_c_30 Rep_2402_c_30_11 9517 10584 + GT2
CAZyme Rep_2402_c_30 Rep_2402_c_30_12 10599 12200 + GT2
CAZyme Rep_2402_c_30 Rep_2402_c_30_13 12227 13021 + GT2
Gene ID: Rep_2402_c_30_4
Type: TC
Location: 2663 - 3649 (+)
Gene ID: Rep_2402_c_30_5
Type: pfam
Location: 3668 - 4846 (+)
Gene ID: Rep_2402_c_30_6
Type: CAZyme
Location: 4858 - 5871 (+)
Gene ID: Rep_2402_c_30_7
Type: pfam
Location: 5899 - 7551 (+)
Gene ID: Rep_2402_c_30_8
Type: CAZyme
Location: 7548 - 8354 (+)
Gene ID: Rep_2402_c_30_9
Type:
Location: 8404 - 8520 (+)
Gene ID: Rep_2402_c_30_10
Type:
Location: 8543 - 9538 (+)
Gene ID: Rep_2402_c_30_11
Type: CAZyme
Location: 9517 - 10584 (+)
Gene ID: Rep_2402_c_30_12
Type: CAZyme
Location: 10599 - 12200 (+)
Gene ID: Rep_2402_c_30_13
Type: CAZyme
Location: 12227 - 13021 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
RUG11237
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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