Cluster: Rep_2402_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2402
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2402_c_15 | Rep_2402_c_15_27 | 33305 | 34054 | + | 2.A.79.1.4 |
| CAZyme | Rep_2402_c_15 | Rep_2402_c_15_28 | 34056 | 35402 | + | GH25 |
| TF | Rep_2402_c_15 | Rep_2402_c_15_29 | 35496 | 35909 | + | TrmB |
| TC | Rep_2402_c_15 | Rep_2402_c_15_30 | 36028 | 36654 | + | 2.A.115.2.14 |
| TC | Rep_2402_c_15 | Rep_2402_c_15_31 | 36651 | 37982 | + | 2.A.66.1.37 |
Gene ID: Rep_2402_c_15_27
Type: TC
Location: 33305 - 34054 (+)
Type: TC
Location: 33305 - 34054 (+)
Gene ID: Rep_2402_c_15_28
Type: CAZyme
Location: 34056 - 35402 (+)
Type: CAZyme
Location: 34056 - 35402 (+)
Gene ID: Rep_2402_c_15_29
Type: TF
Location: 35496 - 35909 (+)
Type: TF
Location: 35496 - 35909 (+)
Gene ID: Rep_2402_c_15_30
Type: TC
Location: 36028 - 36654 (+)
Type: TC
Location: 36028 - 36654 (+)
Gene ID: Rep_2402_c_15_31
Type: TC
Location: 36651 - 37982 (+)
Type: TC
Location: 36651 - 37982 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
RUG11237
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.