Cluster: Rep_2402_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2402
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2402_c_69 | Rep_2402_c_69_198 | 199813 | 201081 | - | 2.A.39.1.1 |
| pfam | Rep_2402_c_69 | Rep_2402_c_69_199 | 201407 | 202438 | + | RlaP |
| NULL(UNKNOWN) | Rep_2402_c_69 | Rep_2402_c_69_200 | 202718 | 202945 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2402_c_69 | Rep_2402_c_69_201 | 203077 | 206865 | + | CBM25 | CBM25 |
| CAZyme | Rep_2402_c_69 | Rep_2402_c_69_202 | 207031 | 207867 | + | GT8 |
| CAZyme | Rep_2402_c_69 | Rep_2402_c_69_203 | 207871 | 208806 | + | GT8 |
Gene ID: Rep_2402_c_69_198
Type: TC
Location: 199813 - 201081 (-)
Type: TC
Location: 199813 - 201081 (-)
Gene ID: Rep_2402_c_69_199
Type: pfam
Location: 201407 - 202438 (+)
Type: pfam
Location: 201407 - 202438 (+)
Gene ID: Rep_2402_c_69_200
Type:
Location: 202718 - 202945 (+)
Type:
Location: 202718 - 202945 (+)
Gene ID: Rep_2402_c_69_201
Type: CAZyme
Location: 203077 - 206865 (+)
Type: CAZyme
Location: 203077 - 206865 (+)
Gene ID: Rep_2402_c_69_202
Type: CAZyme
Location: 207031 - 207867 (+)
Type: CAZyme
Location: 207031 - 207867 (+)
Gene ID: Rep_2402_c_69_203
Type: CAZyme
Location: 207871 - 208806 (+)
Type: CAZyme
Location: 207871 - 208806 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
RUG11237
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.