Cluster: Rep_2402_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2402
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2402_c_69 | Rep_2402_c_69_32 | 26020 | 27021 | + | 4.A.6.1.10 |
| TC | Rep_2402_c_69 | Rep_2402_c_69_33 | 27080 | 27898 | + | 4.A.6.1.19 |
| TC | Rep_2402_c_69 | Rep_2402_c_69_34 | 27895 | 28725 | + | 4.A.6.1.19 |
| CAZyme | Rep_2402_c_69 | Rep_2402_c_69_35 | 28749 | 30434 | + | GH13_31 |
| pfam | Rep_2402_c_69 | Rep_2402_c_69_36 | 30446 | 31024 | + | DUF1349 | GH43_C2 |
| TF | Rep_2402_c_69 | Rep_2402_c_69_37 | 31590 | 32294 | + | GntR |
| TC | Rep_2402_c_69 | Rep_2402_c_69_38 | 32485 | 32793 | + | 4.A.3.2.2 |
| TC | Rep_2402_c_69 | Rep_2402_c_69_39 | 32810 | 34111 | + | 4.A.3.2.2 |
| TC | Rep_2402_c_69 | Rep_2402_c_69_40 | 34138 | 34452 | + | 4.A.3.2.6 |
| CAZyme | Rep_2402_c_69 | Rep_2402_c_69_41 | 34473 | 35903 | + | GH1 |
| STP | Rep_2402_c_69 | Rep_2402_c_69_42 | 35945 | 36202 | + | PTS-HPr |
| TC | Rep_2402_c_69 | Rep_2402_c_69_43 | 36234 | 37844 | + | 8.A.7.1.1 |
| CAZyme | Rep_2402_c_69 | Rep_2402_c_69_44 | 38177 | 42034 | + | CBM25 |
Gene ID: Rep_2402_c_69_32
Type: TC
Location: 26020 - 27021 (+)
Type: TC
Location: 26020 - 27021 (+)
Gene ID: Rep_2402_c_69_33
Type: TC
Location: 27080 - 27898 (+)
Type: TC
Location: 27080 - 27898 (+)
Gene ID: Rep_2402_c_69_34
Type: TC
Location: 27895 - 28725 (+)
Type: TC
Location: 27895 - 28725 (+)
Gene ID: Rep_2402_c_69_35
Type: CAZyme
Location: 28749 - 30434 (+)
Type: CAZyme
Location: 28749 - 30434 (+)
Gene ID: Rep_2402_c_69_36
Type: pfam
Location: 30446 - 31024 (+)
Type: pfam
Location: 30446 - 31024 (+)
Gene ID: Rep_2402_c_69_37
Type: TF
Location: 31590 - 32294 (+)
Type: TF
Location: 31590 - 32294 (+)
Gene ID: Rep_2402_c_69_38
Type: TC
Location: 32485 - 32793 (+)
Type: TC
Location: 32485 - 32793 (+)
Gene ID: Rep_2402_c_69_39
Type: TC
Location: 32810 - 34111 (+)
Type: TC
Location: 32810 - 34111 (+)
Gene ID: Rep_2402_c_69_40
Type: TC
Location: 34138 - 34452 (+)
Type: TC
Location: 34138 - 34452 (+)
Gene ID: Rep_2402_c_69_41
Type: CAZyme
Location: 34473 - 35903 (+)
Type: CAZyme
Location: 34473 - 35903 (+)
Gene ID: Rep_2402_c_69_42
Type: STP
Location: 35945 - 36202 (+)
Type: STP
Location: 35945 - 36202 (+)
Gene ID: Rep_2402_c_69_43
Type: TC
Location: 36234 - 37844 (+)
Type: TC
Location: 36234 - 37844 (+)
Gene ID: Rep_2402_c_69_44
Type: CAZyme
Location: 38177 - 42034 (+)
Type: CAZyme
Location: 38177 - 42034 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
RUG11237
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.