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Cluster: Rep_2402_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2402_c_55 Rep_2402_c_55_45 48311 49123 - GT2
pfam Rep_2402_c_55 Rep_2402_c_55_46 49137 49562 - GtrA_DPMS_TM
CAZyme Rep_2402_c_55 Rep_2402_c_55_47 50015 51979 - GT2 | GT2
CAZyme Rep_2402_c_55 Rep_2402_c_55_48 52015 53850 - GT4
CAZyme Rep_2402_c_55 Rep_2402_c_55_49 53877 55250 - GT2
pfam Rep_2402_c_55 Rep_2402_c_55_50 55247 57391 - RrnaAD | PCMT | CMAS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25
TC Rep_2402_c_55 Rep_2402_c_55_51 57402 58667 - 3.A.1.103.6
TC Rep_2402_c_55 Rep_2402_c_55_52 58677 59489 - 3.A.1.104.1
Gene ID: Rep_2402_c_55_45
Type: CAZyme
Location: 48311 - 49123 (-)
Gene ID: Rep_2402_c_55_46
Type: pfam
Location: 49137 - 49562 (-)
Gene ID: Rep_2402_c_55_47
Type: CAZyme
Location: 50015 - 51979 (-)
Gene ID: Rep_2402_c_55_48
Type: CAZyme
Location: 52015 - 53850 (-)
Gene ID: Rep_2402_c_55_49
Type: CAZyme
Location: 53877 - 55250 (-)
Gene ID: Rep_2402_c_55_50
Type: pfam
Location: 55247 - 57391 (-)
Gene ID: Rep_2402_c_55_51
Type: TC
Location: 57402 - 58667 (-)
Gene ID: Rep_2402_c_55_52
Type: TC
Location: 58677 - 59489 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
RUG11237
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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