dbCAN Logo

Cluster: Rep_2402_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2402_c_53 Rep_2402_c_53_37 41904 42134 + 3.D.1.6.4
pfam Rep_2402_c_53 Rep_2402_c_53_38 42195 42887 + dsrm | Ribonuclease_3 | Ribonucleas_3_3
pfam Rep_2402_c_53 Rep_2402_c_53_39 42894 46454 + SMC_N | SMC_N | SMC_hinge | AAA_15 | AAA_21 | AAA_23
TC Rep_2402_c_53 Rep_2402_c_53_40 46463 47395 + 3.A.5.1.1
STP Rep_2402_c_53 Rep_2402_c_53_41 47415 48626 + ACT | PALP
CAZyme Rep_2402_c_53 Rep_2402_c_53_42 48638 49771 + CE9
STP Rep_2402_c_53 Rep_2402_c_53_43 49927 50550 + TetR_N
TC Rep_2402_c_53 Rep_2402_c_53_44 50638 52416 + 3.A.1.21.1
TC Rep_2402_c_53 Rep_2402_c_53_45 52409 54142 + 3.A.1.21.1
TF Rep_2402_c_53 Rep_2402_c_53_46 54210 55058 - HTH_AraC | HTH_AraC
TC Rep_2402_c_53 Rep_2402_c_53_47 55239 56528 + 3.A.1.1.28
TC Rep_2402_c_53 Rep_2402_c_53_48 56542 57408 + 3.A.1.1.28
TC Rep_2402_c_53 Rep_2402_c_53_49 57408 58238 + 3.A.1.1.28
CAZyme Rep_2402_c_53 Rep_2402_c_53_50 58268 60451 + GH36
NULL(UNKNOWN) Rep_2402_c_53 Rep_2402_c_53_51 60485 61450 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2402_c_53 Rep_2402_c_53_52 61452 62999 + GH13_18
Gene ID: Rep_2402_c_53_37
Type: TC
Location: 41904 - 42134 (+)
Gene ID: Rep_2402_c_53_38
Type: pfam
Location: 42195 - 42887 (+)
Gene ID: Rep_2402_c_53_39
Type: pfam
Location: 42894 - 46454 (+)
Gene ID: Rep_2402_c_53_40
Type: TC
Location: 46463 - 47395 (+)
Gene ID: Rep_2402_c_53_41
Type: STP
Location: 47415 - 48626 (+)
Gene ID: Rep_2402_c_53_42
Type: CAZyme
Location: 48638 - 49771 (+)
Gene ID: Rep_2402_c_53_43
Type: STP
Location: 49927 - 50550 (+)
Gene ID: Rep_2402_c_53_44
Type: TC
Location: 50638 - 52416 (+)
Gene ID: Rep_2402_c_53_45
Type: TC
Location: 52409 - 54142 (+)
Gene ID: Rep_2402_c_53_46
Type: TF
Location: 54210 - 55058 (-)
Gene ID: Rep_2402_c_53_47
Type: TC
Location: 55239 - 56528 (+)
Gene ID: Rep_2402_c_53_48
Type: TC
Location: 56542 - 57408 (+)
Gene ID: Rep_2402_c_53_49
Type: TC
Location: 57408 - 58238 (+)
Gene ID: Rep_2402_c_53_50
Type: CAZyme
Location: 58268 - 60451 (+)
Gene ID: Rep_2402_c_53_51
Type:
Location: 60485 - 61450 (+)
Gene ID: Rep_2402_c_53_52
Type: CAZyme
Location: 61452 - 62999 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
RUG11237
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List