Cluster: Rep_2402_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_2402
- CGC Family ID: CGCFAM_00117
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2402_c_52 | Rep_2402_c_52_71 | 77761 | 79092 | + | 3.A.1.1.27 |
| TC | Rep_2402_c_52 | Rep_2402_c_52_72 | 79283 | 80674 | + | 3.A.1.1.27 |
| TC | Rep_2402_c_52 | Rep_2402_c_52_73 | 80674 | 81546 | + | 3.A.1.1.27 |
| CAZyme | Rep_2402_c_52 | Rep_2402_c_52_74 | 81571 | 83283 | + | GH13_36 |
| TF | Rep_2402_c_52 | Rep_2402_c_52_75 | 83474 | 83989 | + | HTH_3 |
| TC | Rep_2402_c_52 | Rep_2402_c_52_76 | 84098 | 85039 | + | 9.B.70.1.1 |
Gene ID: Rep_2402_c_52_71
Type: TC
Location: 77761 - 79092 (+)
Type: TC
Location: 77761 - 79092 (+)
Gene ID: Rep_2402_c_52_72
Type: TC
Location: 79283 - 80674 (+)
Type: TC
Location: 79283 - 80674 (+)
Gene ID: Rep_2402_c_52_73
Type: TC
Location: 80674 - 81546 (+)
Type: TC
Location: 80674 - 81546 (+)
Gene ID: Rep_2402_c_52_74
Type: CAZyme
Location: 81571 - 83283 (+)
Type: CAZyme
Location: 81571 - 83283 (+)
Gene ID: Rep_2402_c_52_75
Type: TF
Location: 83474 - 83989 (+)
Type: TF
Location: 83474 - 83989 (+)
Gene ID: Rep_2402_c_52_76
Type: TC
Location: 84098 - 85039 (+)
Type: TC
Location: 84098 - 85039 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
RUG11237
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.