Cluster: Rep_2402_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2402
- CGC Family ID: CGCFAM_09372
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2402_c_2 | Rep_2402_c_2_11 | 9130 | 10149 | + | 9.A.11.1.1 |
| TF | Rep_2402_c_2 | Rep_2402_c_2_12 | 10146 | 11042 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2402_c_2 | Rep_2402_c_2_13 | 11181 | 13253 | + | GH31_1 |
| TC | Rep_2402_c_2 | Rep_2402_c_2_14 | 13326 | 14690 | + | 2.A.66.1.22 |
| pfam | Rep_2402_c_2 | Rep_2402_c_2_15 | 14808 | 15167 | + | SpoVAC_SpoVAEB |
| TF | Rep_2402_c_2 | Rep_2402_c_2_16 | 15427 | 15801 | + | GntR |
| TC | Rep_2402_c_2 | Rep_2402_c_2_17 | 15798 | 16700 | + | 3.A.1.126.1 |
Gene ID: Rep_2402_c_2_11
Type: TC
Location: 9130 - 10149 (+)
Type: TC
Location: 9130 - 10149 (+)
Gene ID: Rep_2402_c_2_12
Type: TF
Location: 10146 - 11042 (-)
Type: TF
Location: 10146 - 11042 (-)
Gene ID: Rep_2402_c_2_13
Type: CAZyme
Location: 11181 - 13253 (+)
Type: CAZyme
Location: 11181 - 13253 (+)
Gene ID: Rep_2402_c_2_14
Type: TC
Location: 13326 - 14690 (+)
Type: TC
Location: 13326 - 14690 (+)
Gene ID: Rep_2402_c_2_15
Type: pfam
Location: 14808 - 15167 (+)
Type: pfam
Location: 14808 - 15167 (+)
Gene ID: Rep_2402_c_2_16
Type: TF
Location: 15427 - 15801 (+)
Type: TF
Location: 15427 - 15801 (+)
Gene ID: Rep_2402_c_2_17
Type: TC
Location: 15798 - 16700 (+)
Type: TC
Location: 15798 - 16700 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
RUG11237
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.