Cluster: Rep_2393_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2393
- CGC Family ID: CGCFAM_00272
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2393_c_0 | Rep_2393_c_0_364 | 425067 | 427097 | - | GH42 |
| pfam | Rep_2393_c_0 | Rep_2393_c_0_365 | 427151 | 429133 | - | Helicase_C | UVR | ResIII | UvrB | UvrB_inter |
| pfam | Rep_2393_c_0 | Rep_2393_c_0_366 | 429527 | 429826 | - | AAA-ATPase_like |
| CAZyme | Rep_2393_c_0 | Rep_2393_c_0_367 | 430181 | 431857 | + | CBM13 | GH5_4 |
| NULL(UNKNOWN) | Rep_2393_c_0 | Rep_2393_c_0_368 | 431878 | 432258 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2393_c_0 | Rep_2393_c_0_369 | 432270 | 434468 | - | 2.A.53.1.4 |
Gene ID: Rep_2393_c_0_364
Type: CAZyme
Location: 425067 - 427097 (-)
Type: CAZyme
Location: 425067 - 427097 (-)
Gene ID: Rep_2393_c_0_365
Type: pfam
Location: 427151 - 429133 (-)
Type: pfam
Location: 427151 - 429133 (-)
Gene ID: Rep_2393_c_0_366
Type: pfam
Location: 429527 - 429826 (-)
Type: pfam
Location: 429527 - 429826 (-)
Gene ID: Rep_2393_c_0_367
Type: CAZyme
Location: 430181 - 431857 (+)
Type: CAZyme
Location: 430181 - 431857 (+)
Gene ID: Rep_2393_c_0_368
Type:
Location: 431878 - 432258 (-)
Type:
Location: 431878 - 432258 (-)
Gene ID: Rep_2393_c_0_369
Type: TC
Location: 432270 - 434468 (-)
Type: TC
Location: 432270 - 434468 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Jutongia
Species
Jutongia huaianensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2393_c_0_366 | vegetarian > omnivore | 1.40293 | 0.03463 |
| Rep_2393_c_0_367 | vegan > omnivore | 1.11252 | 0.00241 |