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Cluster: Rep_2393_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2393_c_0 Rep_2393_c_0_2804 3143806 3147237 - GH59
TF Rep_2393_c_0 Rep_2393_c_0_2805 3147365 3148192 + HTH_AraC
TF Rep_2393_c_0 Rep_2393_c_0_2806 3148259 3148924 + 0038753
TC Rep_2393_c_0 Rep_2393_c_0_2807 3148887 3150575 - 2.A.114.1.3
STP Rep_2393_c_0 Rep_2393_c_0_2808 3151163 3152569 - Pribosyltran
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_2809 3152548 3152697 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2393_c_0 Rep_2393_c_0_2810 3152850 3153728 + 2.A.115.1.1
pfam Rep_2393_c_0 Rep_2393_c_0_2811 3153795 3154697 + Cation_efflux
pfam Rep_2393_c_0 Rep_2393_c_0_2812 3154732 3155361 - DNA_binding_1 | YjbR
TC Rep_2393_c_0 Rep_2393_c_0_2813 3155423 3156631 - 2.A.49.9.3
TC Rep_2393_c_0 Rep_2393_c_0_2814 3156961 3158355 + 2.A.25.1.3
Gene ID: Rep_2393_c_0_2804
Type: CAZyme
Location: 3143806 - 3147237 (-)
Gene ID: Rep_2393_c_0_2805
Type: TF
Location: 3147365 - 3148192 (+)
Gene ID: Rep_2393_c_0_2806
Type: TF
Location: 3148259 - 3148924 (+)
Gene ID: Rep_2393_c_0_2807
Type: TC
Location: 3148887 - 3150575 (-)
Gene ID: Rep_2393_c_0_2808
Type: STP
Location: 3151163 - 3152569 (-)
Gene ID: Rep_2393_c_0_2809
Type:
Location: 3152548 - 3152697 (-)
Gene ID: Rep_2393_c_0_2810
Type: TC
Location: 3152850 - 3153728 (+)
Gene ID: Rep_2393_c_0_2811
Type: pfam
Location: 3153795 - 3154697 (+)
Gene ID: Rep_2393_c_0_2812
Type: pfam
Location: 3154732 - 3155361 (-)
Gene ID: Rep_2393_c_0_2813
Type: TC
Location: 3155423 - 3156631 (-)
Gene ID: Rep_2393_c_0_2814
Type: TC
Location: 3156961 - 3158355 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2393_c_0_2810 vegan > omnivore 1.23125 0.00241
Rep_2393_c_0_2813 vegan > omnivore 2.64366 0.00241

🧭 Explore Read Mapping of CGC

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