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Cluster: Rep_2393_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2393_c_0 Rep_2393_c_0_2321 2592138 2593127 + 8.A.5.1.3
CAZyme Rep_2393_c_0 Rep_2393_c_0_2322 2593200 2594816 + GH43_35
TF Rep_2393_c_0 Rep_2393_c_0_2323 2594859 2596058 - HTH_AraC | HTH_AraC
TC Rep_2393_c_0 Rep_2393_c_0_2324 2596222 2598279 + 1.B.52.2.2
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_2325 2598390 2598656 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2393_c_0 Rep_2393_c_0_2326 2598659 2599906 - GlcNAc_2-epim
TC Rep_2393_c_0 Rep_2393_c_0_2327 2600181 2601491 + 2.A.66.1.32
TC Rep_2393_c_0 Rep_2393_c_0_2328 2601802 2604396 + 3.A.3.2.21
Gene ID: Rep_2393_c_0_2321
Type: TC
Location: 2592138 - 2593127 (+)
Gene ID: Rep_2393_c_0_2322
Type: CAZyme
Location: 2593200 - 2594816 (+)
Gene ID: Rep_2393_c_0_2323
Type: TF
Location: 2594859 - 2596058 (-)
Gene ID: Rep_2393_c_0_2324
Type: TC
Location: 2596222 - 2598279 (+)
Gene ID: Rep_2393_c_0_2325
Type:
Location: 2598390 - 2598656 (+)
Gene ID: Rep_2393_c_0_2326
Type: pfam
Location: 2598659 - 2599906 (-)
Gene ID: Rep_2393_c_0_2327
Type: TC
Location: 2600181 - 2601491 (+)
Gene ID: Rep_2393_c_0_2328
Type: TC
Location: 2601802 - 2604396 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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