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Cluster: Rep_2393_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2393_c_0 Rep_2393_c_0_1757 1984135 1984902 + 3.A.1.134.12
TC Rep_2393_c_0 Rep_2393_c_0_1758 1984892 1986934 + 3.A.1.134.2
pfam Rep_2393_c_0 Rep_2393_c_0_1759 1986971 1988515 + IMS | IMS_C
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1760 1988512 1988943 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2393_c_0 Rep_2393_c_0_1761 1989021 1989632 + 2.A.115.2.14
STP Rep_2393_c_0 Rep_2393_c_0_1762 1989771 1990409 + HhH-GPD
TF Rep_2393_c_0 Rep_2393_c_0_1763 1990495 1991469 + LacI
TC Rep_2393_c_0 Rep_2393_c_0_1764 1991724 1993634 + 4.A.1.2.9
CAZyme Rep_2393_c_0 Rep_2393_c_0_1765 1993720 1995189 + GH32
Gene ID: Rep_2393_c_0_1757
Type: TC
Location: 1984135 - 1984902 (+)
Gene ID: Rep_2393_c_0_1758
Type: TC
Location: 1984892 - 1986934 (+)
Gene ID: Rep_2393_c_0_1759
Type: pfam
Location: 1986971 - 1988515 (+)
Gene ID: Rep_2393_c_0_1760
Type:
Location: 1988512 - 1988943 (+)
Gene ID: Rep_2393_c_0_1761
Type: TC
Location: 1989021 - 1989632 (+)
Gene ID: Rep_2393_c_0_1762
Type: STP
Location: 1989771 - 1990409 (+)
Gene ID: Rep_2393_c_0_1763
Type: TF
Location: 1990495 - 1991469 (+)
Gene ID: Rep_2393_c_0_1764
Type: TC
Location: 1991724 - 1993634 (+)
Gene ID: Rep_2393_c_0_1765
Type: CAZyme
Location: 1993720 - 1995189 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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