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Cluster: Rep_2393_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2393_c_0 Rep_2393_c_0_1638 1859205 1860278 + 3.A.1.11.8
TC Rep_2393_c_0 Rep_2393_c_0_1639 1860308 1861135 + 3.A.1.11.7
TC Rep_2393_c_0 Rep_2393_c_0_1640 1861129 1861956 + 3.A.1.11.8
TC Rep_2393_c_0 Rep_2393_c_0_1641 1861943 1863025 + 3.A.1.11.7
TC Rep_2393_c_0 Rep_2393_c_0_1642 1863099 1864826 + 1.B.52.2.2
pfam Rep_2393_c_0 Rep_2393_c_0_1643 1864994 1866097 + Chorismate_synt
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1644 1866672 1866791 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2393_c_0 Rep_2393_c_0_1645 1867257 1868576 + GH3
Gene ID: Rep_2393_c_0_1638
Type: TC
Location: 1859205 - 1860278 (+)
Gene ID: Rep_2393_c_0_1639
Type: TC
Location: 1860308 - 1861135 (+)
Gene ID: Rep_2393_c_0_1640
Type: TC
Location: 1861129 - 1861956 (+)
Gene ID: Rep_2393_c_0_1641
Type: TC
Location: 1861943 - 1863025 (+)
Gene ID: Rep_2393_c_0_1642
Type: TC
Location: 1863099 - 1864826 (+)
Gene ID: Rep_2393_c_0_1643
Type: pfam
Location: 1864994 - 1866097 (+)
Gene ID: Rep_2393_c_0_1644
Type:
Location: 1866672 - 1866791 (+)
Gene ID: Rep_2393_c_0_1645
Type: CAZyme
Location: 1867257 - 1868576 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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