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Cluster: Rep_2393_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2393_c_0 Rep_2393_c_0_1601 1815775 1816707 + 3.A.1.1.42
TC Rep_2393_c_0 Rep_2393_c_0_1602 1816723 1817571 + 3.A.1.1.34
pfam Rep_2393_c_0 Rep_2393_c_0_1603 1817576 1819186 + HlyD_3
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1604 1819186 1820046 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2393_c_0 Rep_2393_c_0_1605 1820115 1821872 + 3.A.1.135.5
TC Rep_2393_c_0 Rep_2393_c_0_1606 1821894 1823636 + 3.A.1.135.5
pfam Rep_2393_c_0 Rep_2393_c_0_1607 1823575 1824504 + S6PP | Hydrolase_3
CAZyme Rep_2393_c_0 Rep_2393_c_0_1608 1824589 1825533 + GH26
TF Rep_2393_c_0 Rep_2393_c_0_1609 1825606 1826346 - HTH_AraC | HTH_AraC
CAZyme Rep_2393_c_0 Rep_2393_c_0_1610 1826594 1827625 + GH5_37
TC Rep_2393_c_0 Rep_2393_c_0_1611 1827745 1829103 + 2.A.66.1.33
Gene ID: Rep_2393_c_0_1601
Type: TC
Location: 1815775 - 1816707 (+)
Gene ID: Rep_2393_c_0_1602
Type: TC
Location: 1816723 - 1817571 (+)
Gene ID: Rep_2393_c_0_1603
Type: pfam
Location: 1817576 - 1819186 (+)
Gene ID: Rep_2393_c_0_1604
Type:
Location: 1819186 - 1820046 (+)
Gene ID: Rep_2393_c_0_1605
Type: TC
Location: 1820115 - 1821872 (+)
Gene ID: Rep_2393_c_0_1606
Type: TC
Location: 1821894 - 1823636 (+)
Gene ID: Rep_2393_c_0_1607
Type: pfam
Location: 1823575 - 1824504 (+)
Gene ID: Rep_2393_c_0_1608
Type: CAZyme
Location: 1824589 - 1825533 (+)
Gene ID: Rep_2393_c_0_1609
Type: TF
Location: 1825606 - 1826346 (-)
Gene ID: Rep_2393_c_0_1610
Type: CAZyme
Location: 1826594 - 1827625 (+)
Gene ID: Rep_2393_c_0_1611
Type: TC
Location: 1827745 - 1829103 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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