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Cluster: Rep_2393_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2393_c_0 Rep_2393_c_0_1562 1767117 1767764 + 3.A.1.124.6
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1563 1767801 1768535 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2393_c_0 Rep_2393_c_0_1564 1768489 1769190 - 2.A.106.1.3
TC Rep_2393_c_0 Rep_2393_c_0_1565 1769544 1770761 - 8.A.59.4.1
CAZyme Rep_2393_c_0 Rep_2393_c_0_1566 1771541 1773943 + GH94
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1567 1774181 1775407 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1568 1775423 1776295 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2393_c_0 Rep_2393_c_0_1569 1776340 1777011 + 3.A.1.124.6
NULL(UNKNOWN) Rep_2393_c_0 Rep_2393_c_0_1570 1776989 1777831 + NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_2393_c_0 Rep_2393_c_0_1571 1777950 1778732 - MCPsignal
CAZyme Rep_2393_c_0 Rep_2393_c_0_1572 1778919 1781675 + GH2
TC Rep_2393_c_0 Rep_2393_c_0_1573 1781721 1783010 + 3.D.10.1.4
Gene ID: Rep_2393_c_0_1562
Type: TC
Location: 1767117 - 1767764 (+)
Gene ID: Rep_2393_c_0_1563
Type:
Location: 1767801 - 1768535 (+)
Gene ID: Rep_2393_c_0_1564
Type: TC
Location: 1768489 - 1769190 (-)
Gene ID: Rep_2393_c_0_1565
Type: TC
Location: 1769544 - 1770761 (-)
Gene ID: Rep_2393_c_0_1566
Type: CAZyme
Location: 1771541 - 1773943 (+)
Gene ID: Rep_2393_c_0_1567
Type:
Location: 1774181 - 1775407 (+)
Gene ID: Rep_2393_c_0_1568
Type:
Location: 1775423 - 1776295 (+)
Gene ID: Rep_2393_c_0_1569
Type: TC
Location: 1776340 - 1777011 (+)
Gene ID: Rep_2393_c_0_1570
Type:
Location: 1776989 - 1777831 (+)
Gene ID: Rep_2393_c_0_1571
Type: STP
Location: 1777950 - 1778732 (-)
Gene ID: Rep_2393_c_0_1572
Type: CAZyme
Location: 1778919 - 1781675 (+)
Gene ID: Rep_2393_c_0_1573
Type: TC
Location: 1781721 - 1783010 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2393_c_0_1562 vegan > omnivore 2.67512 0.00241

🧭 Explore Read Mapping of CGC

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