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Cluster: Rep_2393_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2393_c_0 Rep_2393_c_0_1214 1357586 1359358 + 1.B.52.2.2
pfam Rep_2393_c_0 Rep_2393_c_0_1215 1359394 1359837 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10
pfam Rep_2393_c_0 Rep_2393_c_0_1216 1360047 1360223 - DUF4250
CAZyme Rep_2393_c_0 Rep_2393_c_0_1217 1360258 1361334 - GT28
pfam Rep_2393_c_0 Rep_2393_c_0_1218 1361525 1363210 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_2393_c_0 Rep_2393_c_0_1219 1363211 1363900 + 3.A.1.122.2
TC Rep_2393_c_0 Rep_2393_c_0_1220 1363916 1365202 + 3.A.1.122.2
TC Rep_2393_c_0 Rep_2393_c_0_1221 1365289 1366761 - 2.A.38.1.1
TC Rep_2393_c_0 Rep_2393_c_0_1222 1366775 1368163 - 2.A.38.1.1
pfam Rep_2393_c_0 Rep_2393_c_0_1223 1368349 1368669 + SpoIIID
CAZyme Rep_2393_c_0 Rep_2393_c_0_1224 1368726 1371062 - GH3
pfam Rep_2393_c_0 Rep_2393_c_0_1225 1371275 1375168 + RNA_pol_Rpb2_6 | RNA_pol_Rpb2_7 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_1 | RNA_pol_Rpb2_3 | RNA_pol_Rpb2_45
pfam Rep_2393_c_0 Rep_2393_c_0_1226 1375219 1378971 + RNA_pol_Rpb1_2 | RNA_pol_Rpb1_3 | RNA_pol_Rpb1_1 | RNA_pol_Rpb1_5 | RNA_pol_Rpb1_4
CAZyme Rep_2393_c_0 Rep_2393_c_0_1227 1379214 1381682 + GH5_4
CAZyme Rep_2393_c_0 Rep_2393_c_0_1228 1381793 1385062 + GH3
pfam Rep_2393_c_0 Rep_2393_c_0_1229 1385098 1385481 + bPH_2
TC Rep_2393_c_0 Rep_2393_c_0_1230 1385634 1388276 + 4.A.2.1.17
Gene ID: Rep_2393_c_0_1214
Type: TC
Location: 1357586 - 1359358 (+)
Gene ID: Rep_2393_c_0_1215
Type: pfam
Location: 1359394 - 1359837 (+)
Gene ID: Rep_2393_c_0_1216
Type: pfam
Location: 1360047 - 1360223 (-)
Gene ID: Rep_2393_c_0_1217
Type: CAZyme
Location: 1360258 - 1361334 (-)
Gene ID: Rep_2393_c_0_1218
Type: pfam
Location: 1361525 - 1363210 (+)
Gene ID: Rep_2393_c_0_1219
Type: TC
Location: 1363211 - 1363900 (+)
Gene ID: Rep_2393_c_0_1220
Type: TC
Location: 1363916 - 1365202 (+)
Gene ID: Rep_2393_c_0_1221
Type: TC
Location: 1365289 - 1366761 (-)
Gene ID: Rep_2393_c_0_1222
Type: TC
Location: 1366775 - 1368163 (-)
Gene ID: Rep_2393_c_0_1223
Type: pfam
Location: 1368349 - 1368669 (+)
Gene ID: Rep_2393_c_0_1224
Type: CAZyme
Location: 1368726 - 1371062 (-)
Gene ID: Rep_2393_c_0_1225
Type: pfam
Location: 1371275 - 1375168 (+)
Gene ID: Rep_2393_c_0_1226
Type: pfam
Location: 1375219 - 1378971 (+)
Gene ID: Rep_2393_c_0_1227
Type: CAZyme
Location: 1379214 - 1381682 (+)
Gene ID: Rep_2393_c_0_1228
Type: CAZyme
Location: 1381793 - 1385062 (+)
Gene ID: Rep_2393_c_0_1229
Type: pfam
Location: 1385098 - 1385481 (+)
Gene ID: Rep_2393_c_0_1230
Type: TC
Location: 1385634 - 1388276 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2393_c_0_1228 vegan > omnivore 1.11983 0.00241

🧭 Explore Read Mapping of CGC

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