dbCAN Logo

Cluster: Rep_2393_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2393_c_0 Rep_2393_c_0_920 1011223 1011993 + 3.A.2.1.5
TC Rep_2393_c_0 Rep_2393_c_0_921 1012028 1012291 + 3.A.2.1.5
pfam Rep_2393_c_0 Rep_2393_c_0_922 1012330 1012884 + ATP-synt_B
pfam Rep_2393_c_0 Rep_2393_c_0_923 1012872 1013444 + OSCP
TC Rep_2393_c_0 Rep_2393_c_0_924 1013492 1015000 + 3.A.2.1.5
TC Rep_2393_c_0 Rep_2393_c_0_925 1015054 1015932 + 3.A.2.1.5
TC Rep_2393_c_0 Rep_2393_c_0_926 1016031 1017434 + 3.A.2.1.5
pfam Rep_2393_c_0 Rep_2393_c_0_927 1017446 1017853 + ATP-synt_DE | ATP-synt_DE_N
TC Rep_2393_c_0 Rep_2393_c_0_928 1018046 1020445 + 3.A.1.122.13
TC Rep_2393_c_0 Rep_2393_c_0_929 1020490 1022961 + 3.A.1.122.13
pfam Rep_2393_c_0 Rep_2393_c_0_930 1023031 1024065 + Dus
CAZyme Rep_2393_c_0 Rep_2393_c_0_931 1024135 1025259 + GH5_2
pfam Rep_2393_c_0 Rep_2393_c_0_932 1025531 1026517 + DUF975
TC Rep_2393_c_0 Rep_2393_c_0_933 1026571 1027821 + 9.B.34.1.3
TC Rep_2393_c_0 Rep_2393_c_0_934 1027853 1028620 + 3.A.1.3.23
Gene ID: Rep_2393_c_0_920
Type: TC
Location: 1011223 - 1011993 (+)
Gene ID: Rep_2393_c_0_921
Type: TC
Location: 1012028 - 1012291 (+)
Gene ID: Rep_2393_c_0_922
Type: pfam
Location: 1012330 - 1012884 (+)
Gene ID: Rep_2393_c_0_923
Type: pfam
Location: 1012872 - 1013444 (+)
Gene ID: Rep_2393_c_0_924
Type: TC
Location: 1013492 - 1015000 (+)
Gene ID: Rep_2393_c_0_925
Type: TC
Location: 1015054 - 1015932 (+)
Gene ID: Rep_2393_c_0_926
Type: TC
Location: 1016031 - 1017434 (+)
Gene ID: Rep_2393_c_0_927
Type: pfam
Location: 1017446 - 1017853 (+)
Gene ID: Rep_2393_c_0_928
Type: TC
Location: 1018046 - 1020445 (+)
Gene ID: Rep_2393_c_0_929
Type: TC
Location: 1020490 - 1022961 (+)
Gene ID: Rep_2393_c_0_930
Type: pfam
Location: 1023031 - 1024065 (+)
Gene ID: Rep_2393_c_0_931
Type: CAZyme
Location: 1024135 - 1025259 (+)
Gene ID: Rep_2393_c_0_932
Type: pfam
Location: 1025531 - 1026517 (+)
Gene ID: Rep_2393_c_0_933
Type: TC
Location: 1026571 - 1027821 (+)
Gene ID: Rep_2393_c_0_934
Type: TC
Location: 1027853 - 1028620 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2393_c_0_927 vegan > omnivore 1.07103 0.00241
Rep_2393_c_0_931 vegan > omnivore 1.16905 0.00241

🧭 Explore Read Mapping of CGC

← Back to Cluster List