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Cluster: Rep_2392_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2392_c_0 Rep_2392_c_0_1000 1074204 1077707 - GH59
TF Rep_2392_c_0 Rep_2392_c_0_1001 1077890 1078720 + HTH_AraC
TF Rep_2392_c_0 Rep_2392_c_0_1002 1078734 1079399 + 0038753
TC Rep_2392_c_0 Rep_2392_c_0_1003 1079362 1081050 - 2.A.114.1.3
STP Rep_2392_c_0 Rep_2392_c_0_1004 1081658 1083064 - Pribosyltran
TC Rep_2392_c_0 Rep_2392_c_0_1005 1083272 1084162 + 2.A.115.1.1
pfam Rep_2392_c_0 Rep_2392_c_0_1006 1084205 1085113 + Cation_efflux
pfam Rep_2392_c_0 Rep_2392_c_0_1007 1085138 1085767 - DNA_binding_1 | YjbR
TC Rep_2392_c_0 Rep_2392_c_0_1008 1085795 1087027 - 2.A.49.9.4
TC Rep_2392_c_0 Rep_2392_c_0_1009 1087273 1089501 - 3.A.1.135.6
TC Rep_2392_c_0 Rep_2392_c_0_1010 1089501 1091258 - 3.A.1.135.6
Gene ID: Rep_2392_c_0_1000
Type: CAZyme
Location: 1074204 - 1077707 (-)
Gene ID: Rep_2392_c_0_1001
Type: TF
Location: 1077890 - 1078720 (+)
Gene ID: Rep_2392_c_0_1002
Type: TF
Location: 1078734 - 1079399 (+)
Gene ID: Rep_2392_c_0_1003
Type: TC
Location: 1079362 - 1081050 (-)
Gene ID: Rep_2392_c_0_1004
Type: STP
Location: 1081658 - 1083064 (-)
Gene ID: Rep_2392_c_0_1005
Type: TC
Location: 1083272 - 1084162 (+)
Gene ID: Rep_2392_c_0_1006
Type: pfam
Location: 1084205 - 1085113 (+)
Gene ID: Rep_2392_c_0_1007
Type: pfam
Location: 1085138 - 1085767 (-)
Gene ID: Rep_2392_c_0_1008
Type: TC
Location: 1085795 - 1087027 (-)
Gene ID: Rep_2392_c_0_1009
Type: TC
Location: 1087273 - 1089501 (-)
Gene ID: Rep_2392_c_0_1010
Type: TC
Location: 1089501 - 1091258 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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