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Cluster: Rep_2392_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2392_c_0 Rep_2392_c_0_2453 2686030 2686887 + 3.A.1.26.7
TC Rep_2392_c_0 Rep_2392_c_0_2454 2687283 2687813 + 3.A.1.25.6
TC Rep_2392_c_0 Rep_2392_c_0_2455 2687791 2688144 + 3.A.1.26.9
TC Rep_2392_c_0 Rep_2392_c_0_2456 2688141 2688947 + 3.A.1.26.7
pfam Rep_2392_c_0 Rep_2392_c_0_2457 2689046 2689849 + PseudoU_synth_1 | PseudoU_synth_1
TC Rep_2392_c_0 Rep_2392_c_0_2458 2689953 2690780 + 3.A.1.104.1
TC Rep_2392_c_0 Rep_2392_c_0_2459 2690795 2692021 + 3.A.1.103.4
CAZyme Rep_2392_c_0 Rep_2392_c_0_2460 2692052 2695090 + GT2 | GT2
pfam Rep_2392_c_0 Rep_2392_c_0_2461 2695101 2697341 + DUF2142
CAZyme Rep_2392_c_0 Rep_2392_c_0_2462 2697426 2698115 + GT2
Gene ID: Rep_2392_c_0_2453
Type: TC
Location: 2686030 - 2686887 (+)
Gene ID: Rep_2392_c_0_2454
Type: TC
Location: 2687283 - 2687813 (+)
Gene ID: Rep_2392_c_0_2455
Type: TC
Location: 2687791 - 2688144 (+)
Gene ID: Rep_2392_c_0_2456
Type: TC
Location: 2688141 - 2688947 (+)
Gene ID: Rep_2392_c_0_2457
Type: pfam
Location: 2689046 - 2689849 (+)
Gene ID: Rep_2392_c_0_2458
Type: TC
Location: 2689953 - 2690780 (+)
Gene ID: Rep_2392_c_0_2459
Type: TC
Location: 2690795 - 2692021 (+)
Gene ID: Rep_2392_c_0_2460
Type: CAZyme
Location: 2692052 - 2695090 (+)
Gene ID: Rep_2392_c_0_2461
Type: pfam
Location: 2695101 - 2697341 (+)
Gene ID: Rep_2392_c_0_2462
Type: CAZyme
Location: 2697426 - 2698115 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2392_c_0_2454 vegetarian > vegan 1.27420 0.02258
Rep_2392_c_0_2455 vegetarian > vegan 1.14650 0.03289

🧭 Explore Read Mapping of CGC

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