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Cluster: Rep_2392_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2392_c_0 Rep_2392_c_0_231 240756 242387 - 3.A.1.121.4
CAZyme Rep_2392_c_0 Rep_2392_c_0_232 243323 245296 + GH13_11
NULL(UNKNOWN) Rep_2392_c_0 Rep_2392_c_0_233 245358 245549 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2392_c_0 Rep_2392_c_0_234 245664 246185 + DUF5721
TC Rep_2392_c_0 Rep_2392_c_0_235 246291 248030 + 3.A.11.1.3
TC Rep_2392_c_0 Rep_2392_c_0_236 248057 249115 + 3.A.15.2.1
pfam Rep_2392_c_0 Rep_2392_c_0_237 249380 250594 + T2SSF | T2SSF
pfam Rep_2392_c_0 Rep_2392_c_0_238 250694 251191 + N_methyl
TC Rep_2392_c_0 Rep_2392_c_0_239 251215 251982 + 3.A.15.2.1
Gene ID: Rep_2392_c_0_231
Type: TC
Location: 240756 - 242387 (-)
Gene ID: Rep_2392_c_0_232
Type: CAZyme
Location: 243323 - 245296 (+)
Gene ID: Rep_2392_c_0_233
Type:
Location: 245358 - 245549 (-)
Gene ID: Rep_2392_c_0_234
Type: pfam
Location: 245664 - 246185 (+)
Gene ID: Rep_2392_c_0_235
Type: TC
Location: 246291 - 248030 (+)
Gene ID: Rep_2392_c_0_236
Type: TC
Location: 248057 - 249115 (+)
Gene ID: Rep_2392_c_0_237
Type: pfam
Location: 249380 - 250594 (+)
Gene ID: Rep_2392_c_0_238
Type: pfam
Location: 250694 - 251191 (+)
Gene ID: Rep_2392_c_0_239
Type: TC
Location: 251215 - 251982 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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