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Cluster: Rep_2392_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2392_c_0 Rep_2392_c_0_1837 2071812 2073236 - 2.A.40.1.2
TF Rep_2392_c_0 Rep_2392_c_0_1838 2073532 2073999 + MarR
TC Rep_2392_c_0 Rep_2392_c_0_1839 2073996 2075327 + 2.A.66.1.37
STP Rep_2392_c_0 Rep_2392_c_0_1840 2075499 2076059 + Sigma70_r2 | Sigma70_r4_2
pfam Rep_2392_c_0 Rep_2392_c_0_1841 2076127 2077629 + DUF4179
TC Rep_2392_c_0 Rep_2392_c_0_1842 2077702 2078118 + 1.A.22.1.4
pfam Rep_2392_c_0 Rep_2392_c_0_1843 2078186 2079037 - SDH_alpha
pfam Rep_2392_c_0 Rep_2392_c_0_1844 2079056 2079712 - SDH_beta | ACT_AHAS_ss
TC Rep_2392_c_0 Rep_2392_c_0_1845 2080374 2082464 - 3.A.3.32.3
pfam Rep_2392_c_0 Rep_2392_c_0_1846 2082471 2082776 - DUF6110
TC Rep_2392_c_0 Rep_2392_c_0_1847 2082915 2084510 - 2.A.36.6.11
CAZyme Rep_2392_c_0 Rep_2392_c_0_1848 2084710 2087469 + GH3
Gene ID: Rep_2392_c_0_1837
Type: TC
Location: 2071812 - 2073236 (-)
Gene ID: Rep_2392_c_0_1838
Type: TF
Location: 2073532 - 2073999 (+)
Gene ID: Rep_2392_c_0_1839
Type: TC
Location: 2073996 - 2075327 (+)
Gene ID: Rep_2392_c_0_1840
Type: STP
Location: 2075499 - 2076059 (+)
Gene ID: Rep_2392_c_0_1841
Type: pfam
Location: 2076127 - 2077629 (+)
Gene ID: Rep_2392_c_0_1842
Type: TC
Location: 2077702 - 2078118 (+)
Gene ID: Rep_2392_c_0_1843
Type: pfam
Location: 2078186 - 2079037 (-)
Gene ID: Rep_2392_c_0_1844
Type: pfam
Location: 2079056 - 2079712 (-)
Gene ID: Rep_2392_c_0_1845
Type: TC
Location: 2080374 - 2082464 (-)
Gene ID: Rep_2392_c_0_1846
Type: pfam
Location: 2082471 - 2082776 (-)
Gene ID: Rep_2392_c_0_1847
Type: TC
Location: 2082915 - 2084510 (-)
Gene ID: Rep_2392_c_0_1848
Type: CAZyme
Location: 2084710 - 2087469 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2392_c_0_1844 vegetarian > vegan 2.55689 0.04206
Rep_2392_c_0_1845 vegetarian > vegan 1.11982 0.02258

🧭 Explore Read Mapping of CGC

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