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Cluster: Rep_2392_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2392_c_0 Rep_2392_c_0_1639 1826429 1827712 - 3.A.1.122.2
TC Rep_2392_c_0 Rep_2392_c_0_1640 1827799 1828497 - 3.A.1.122.2
pfam Rep_2392_c_0 Rep_2392_c_0_1641 1828498 1830174 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
CAZyme Rep_2392_c_0 Rep_2392_c_0_1642 1830373 1831449 + GT28
pfam Rep_2392_c_0 Rep_2392_c_0_1643 1831449 1831625 + DUF4250
pfam Rep_2392_c_0 Rep_2392_c_0_1644 1831762 1832205 - Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10
TC Rep_2392_c_0 Rep_2392_c_0_1645 1832308 1834080 - 1.B.52.2.2
Gene ID: Rep_2392_c_0_1639
Type: TC
Location: 1826429 - 1827712 (-)
Gene ID: Rep_2392_c_0_1640
Type: TC
Location: 1827799 - 1828497 (-)
Gene ID: Rep_2392_c_0_1641
Type: pfam
Location: 1828498 - 1830174 (-)
Gene ID: Rep_2392_c_0_1642
Type: CAZyme
Location: 1830373 - 1831449 (+)
Gene ID: Rep_2392_c_0_1643
Type: pfam
Location: 1831449 - 1831625 (+)
Gene ID: Rep_2392_c_0_1644
Type: pfam
Location: 1831762 - 1832205 (-)
Gene ID: Rep_2392_c_0_1645
Type: TC
Location: 1832308 - 1834080 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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