Cluster: Rep_2392_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2392
- CGC Family ID: CGCFAM_01778
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2392_c_0 | Rep_2392_c_0_1621 | 1794286 | 1796922 | - | 4.A.2.1.17 |
| pfam | Rep_2392_c_0 | Rep_2392_c_0_1622 | 1797087 | 1797470 | - | bPH_2 |
| CAZyme | Rep_2392_c_0 | Rep_2392_c_0_1623 | 1797560 | 1800820 | - | GH3 |
| CAZyme | Rep_2392_c_0 | Rep_2392_c_0_1624 | 1800973 | 1803483 | - | GH5_4 |
| pfam | Rep_2392_c_0 | Rep_2392_c_0_1625 | 1803641 | 1807393 | - | RNA_pol_Rpb1_2 | RNA_pol_Rpb1_3 | RNA_pol_Rpb1_1 | RNA_pol_Rpb1_5 | RNA_pol_Rpb1_4 |
| pfam | Rep_2392_c_0 | Rep_2392_c_0_1626 | 1807444 | 1811337 | - | RNA_pol_Rpb2_6 | RNA_pol_Rpb2_7 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_1 | RNA_pol_Rpb2_3 | RNA_pol_Rpb2_45 |
| CAZyme | Rep_2392_c_0 | Rep_2392_c_0_1627 | 1811551 | 1813893 | + | GH3 |
| NULL(UNKNOWN) | Rep_2392_c_0 | Rep_2392_c_0_1628 | 1813874 | 1813963 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2392_c_0 | Rep_2392_c_0_1629 | 1813953 | 1814273 | - | SpoIIID |
| TC | Rep_2392_c_0 | Rep_2392_c_0_1630 | 1814462 | 1815850 | + | 2.A.38.1.1 |
| TC | Rep_2392_c_0 | Rep_2392_c_0_1631 | 1815864 | 1817336 | + | 2.A.38.1.1 |
| CAZyme | Rep_2392_c_0 | Rep_2392_c_0_1632 | 1817488 | 1820037 | - | GH5_2 |
Gene ID: Rep_2392_c_0_1621
Type: TC
Location: 1794286 - 1796922 (-)
Type: TC
Location: 1794286 - 1796922 (-)
Gene ID: Rep_2392_c_0_1622
Type: pfam
Location: 1797087 - 1797470 (-)
Type: pfam
Location: 1797087 - 1797470 (-)
Gene ID: Rep_2392_c_0_1623
Type: CAZyme
Location: 1797560 - 1800820 (-)
Type: CAZyme
Location: 1797560 - 1800820 (-)
Gene ID: Rep_2392_c_0_1624
Type: CAZyme
Location: 1800973 - 1803483 (-)
Type: CAZyme
Location: 1800973 - 1803483 (-)
Gene ID: Rep_2392_c_0_1625
Type: pfam
Location: 1803641 - 1807393 (-)
Type: pfam
Location: 1803641 - 1807393 (-)
Gene ID: Rep_2392_c_0_1626
Type: pfam
Location: 1807444 - 1811337 (-)
Type: pfam
Location: 1807444 - 1811337 (-)
Gene ID: Rep_2392_c_0_1627
Type: CAZyme
Location: 1811551 - 1813893 (+)
Type: CAZyme
Location: 1811551 - 1813893 (+)
Gene ID: Rep_2392_c_0_1628
Type:
Location: 1813874 - 1813963 (-)
Type:
Location: 1813874 - 1813963 (-)
Gene ID: Rep_2392_c_0_1629
Type: pfam
Location: 1813953 - 1814273 (-)
Type: pfam
Location: 1813953 - 1814273 (-)
Gene ID: Rep_2392_c_0_1630
Type: TC
Location: 1814462 - 1815850 (+)
Type: TC
Location: 1814462 - 1815850 (+)
Gene ID: Rep_2392_c_0_1631
Type: TC
Location: 1815864 - 1817336 (+)
Type: TC
Location: 1815864 - 1817336 (+)
Gene ID: Rep_2392_c_0_1632
Type: CAZyme
Location: 1817488 - 1820037 (-)
Type: CAZyme
Location: 1817488 - 1820037 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Jutongia
Species
Jutongia sp003524945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.