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Cluster: Rep_2390_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2390_c_1 Rep_2390_c_1_31 43377 44465 + GT2
pfam Rep_2390_c_1 Rep_2390_c_1_32 44481 45428 + LicD
pfam Rep_2390_c_1 Rep_2390_c_1_33 45455 46495 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | GDP_Man_Dehyd
CAZyme Rep_2390_c_1 Rep_2390_c_1_34 46547 48385 - GT2
TC Rep_2390_c_1 Rep_2390_c_1_35 48405 49160 - 3.A.1.103.1
TC Rep_2390_c_1 Rep_2390_c_1_36 49249 50040 - 3.A.1.103.4
pfam Rep_2390_c_1 Rep_2390_c_1_37 50320 50913 - Hydrolase | HAD_2
CAZyme Rep_2390_c_1 Rep_2390_c_1_38 50891 51931 - GT2
CAZyme Rep_2390_c_1 Rep_2390_c_1_39 51985 53193 - GT4
TC Rep_2390_c_1 Rep_2390_c_1_40 53249 54676 - 9.B.18.1.1
pfam Rep_2390_c_1 Rep_2390_c_1_41 54839 56464 - HMGL-like
NULL(UNKNOWN) Rep_2390_c_1 Rep_2390_c_1_42 56756 59590 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2390_c_1 Rep_2390_c_1_43 59621 59959 - 2.A.7.33.5
NULL(UNKNOWN) Rep_2390_c_1 Rep_2390_c_1_44 59949 60326 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2390_c_1 Rep_2390_c_1_45 60363 61541 - GARS_A | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C
CAZyme Rep_2390_c_1 Rep_2390_c_1_46 61562 62518 - GT2
Gene ID: Rep_2390_c_1_31
Type: CAZyme
Location: 43377 - 44465 (+)
Gene ID: Rep_2390_c_1_32
Type: pfam
Location: 44481 - 45428 (+)
Gene ID: Rep_2390_c_1_33
Type: pfam
Location: 45455 - 46495 (+)
Gene ID: Rep_2390_c_1_34
Type: CAZyme
Location: 46547 - 48385 (-)
Gene ID: Rep_2390_c_1_35
Type: TC
Location: 48405 - 49160 (-)
Gene ID: Rep_2390_c_1_36
Type: TC
Location: 49249 - 50040 (-)
Gene ID: Rep_2390_c_1_37
Type: pfam
Location: 50320 - 50913 (-)
Gene ID: Rep_2390_c_1_38
Type: CAZyme
Location: 50891 - 51931 (-)
Gene ID: Rep_2390_c_1_39
Type: CAZyme
Location: 51985 - 53193 (-)
Gene ID: Rep_2390_c_1_40
Type: TC
Location: 53249 - 54676 (-)
Gene ID: Rep_2390_c_1_41
Type: pfam
Location: 54839 - 56464 (-)
Gene ID: Rep_2390_c_1_42
Type:
Location: 56756 - 59590 (-)
Gene ID: Rep_2390_c_1_43
Type: TC
Location: 59621 - 59959 (-)
Gene ID: Rep_2390_c_1_44
Type:
Location: 59949 - 60326 (-)
Gene ID: Rep_2390_c_1_45
Type: pfam
Location: 60363 - 61541 (-)
Gene ID: Rep_2390_c_1_46
Type: CAZyme
Location: 61562 - 62518 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2390_c_1_34 vegan > omnivore 1.76976 0.00241
Rep_2390_c_1_35 vegan > omnivore 1.75186 0.00241
Rep_2390_c_1_36 vegan > omnivore 3.28769 0.00241
Rep_2390_c_1_36 vegetarian > omnivore 2.74982 0.02960
Rep_2390_c_1_37 vegan > omnivore 15.84985 0.00241
Rep_2390_c_1_37 vegetarian > omnivore 11.91588 0.01720
Rep_2390_c_1_39 vegan > omnivore 2.19589 0.00241
Rep_2390_c_1_40 vegan > omnivore 2.05695 0.00241
Rep_2390_c_1_41 vegan > omnivore 2.20124 0.00241
Rep_2390_c_1_42 vegan > omnivore 2.83008 0.00241
Rep_2390_c_1_43 vegan > omnivore 1.75619 0.00241
Rep_2390_c_1_44 vegan > omnivore 1.78474 0.00241
Rep_2390_c_1_45 vegan > omnivore 2.33829 0.00241

🧭 Explore Read Mapping of CGC

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