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Cluster: Rep_2390_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2390_c_1 Rep_2390_c_1_1684 2010832 2012148 + 2.A.23.1.5
STP Rep_2390_c_1 Rep_2390_c_1_1685 2012203 2014743 + HATPase_c | HisKA | Response_reg
pfam Rep_2390_c_1 Rep_2390_c_1_1686 2014816 2015187 + Hpt
TC Rep_2390_c_1 Rep_2390_c_1_1687 2015192 2015866 + 9.B.143.2.3
pfam Rep_2390_c_1 Rep_2390_c_1_1688 2015888 2017432 + IMS | IMS_C
NULL(UNKNOWN) Rep_2390_c_1 Rep_2390_c_1_1689 2017448 2017870 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2390_c_1 Rep_2390_c_1_1690 2017867 2019306 - 2.A.38.1.1
TC Rep_2390_c_1 Rep_2390_c_1_1691 2019318 2020676 - 3.A.3.1.8
pfam Rep_2390_c_1 Rep_2390_c_1_1692 2020942 2021784 + DUF3737
TC Rep_2390_c_1 Rep_2390_c_1_1693 2021786 2023210 + 2.A.66.1.28
STP Rep_2390_c_1 Rep_2390_c_1_1694 2023295 2024458 + Aminotran_1_2
CAZyme Rep_2390_c_1 Rep_2390_c_1_1695 2024546 2025478 - CE4
pfam Rep_2390_c_1 Rep_2390_c_1_1696 2026001 2026882 + PBP_like_2 | PBP_like_2 | SBP_bac_11
TC Rep_2390_c_1 Rep_2390_c_1_1697 2027013 2027882 + 3.A.1.7.5
TC Rep_2390_c_1 Rep_2390_c_1_1698 2027884 2028798 + 3.A.1.7.5
TC Rep_2390_c_1 Rep_2390_c_1_1699 2028816 2029625 + 3.A.1.7.5
pfam Rep_2390_c_1 Rep_2390_c_1_1700 2029675 2030325 + PhoU | PhoU
TC Rep_2390_c_1 Rep_2390_c_1_1701 2030514 2032271 + 2.A.58.2.2
Gene ID: Rep_2390_c_1_1684
Type: TC
Location: 2010832 - 2012148 (+)
Gene ID: Rep_2390_c_1_1685
Type: STP
Location: 2012203 - 2014743 (+)
Gene ID: Rep_2390_c_1_1686
Type: pfam
Location: 2014816 - 2015187 (+)
Gene ID: Rep_2390_c_1_1687
Type: TC
Location: 2015192 - 2015866 (+)
Gene ID: Rep_2390_c_1_1688
Type: pfam
Location: 2015888 - 2017432 (+)
Gene ID: Rep_2390_c_1_1689
Type:
Location: 2017448 - 2017870 (+)
Gene ID: Rep_2390_c_1_1690
Type: TC
Location: 2017867 - 2019306 (-)
Gene ID: Rep_2390_c_1_1691
Type: TC
Location: 2019318 - 2020676 (-)
Gene ID: Rep_2390_c_1_1692
Type: pfam
Location: 2020942 - 2021784 (+)
Gene ID: Rep_2390_c_1_1693
Type: TC
Location: 2021786 - 2023210 (+)
Gene ID: Rep_2390_c_1_1694
Type: STP
Location: 2023295 - 2024458 (+)
Gene ID: Rep_2390_c_1_1695
Type: CAZyme
Location: 2024546 - 2025478 (-)
Gene ID: Rep_2390_c_1_1696
Type: pfam
Location: 2026001 - 2026882 (+)
Gene ID: Rep_2390_c_1_1697
Type: TC
Location: 2027013 - 2027882 (+)
Gene ID: Rep_2390_c_1_1698
Type: TC
Location: 2027884 - 2028798 (+)
Gene ID: Rep_2390_c_1_1699
Type: TC
Location: 2028816 - 2029625 (+)
Gene ID: Rep_2390_c_1_1700
Type: pfam
Location: 2029675 - 2030325 (+)
Gene ID: Rep_2390_c_1_1701
Type: TC
Location: 2030514 - 2032271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2390_c_1_1685 vegan > omnivore 2.07402 0.00241
Rep_2390_c_1_1686 vegan > omnivore 1.31518 0.00241
Rep_2390_c_1_1686 vegetarian > omnivore 1.15829 0.02960
Rep_2390_c_1_1687 vegan > omnivore 1.03331 0.00241
Rep_2390_c_1_1689 vegan > omnivore 2.05502 0.00241
Rep_2390_c_1_1691 vegan > omnivore 1.12013 0.00241
Rep_2390_c_1_1692 vegan > omnivore 3.31698 0.00241
Rep_2390_c_1_1692 vegetarian > omnivore 2.04289 0.01041
Rep_2390_c_1_1693 vegan > omnivore 2.39443 0.00241
Rep_2390_c_1_1694 vegetarian > omnivore 1.02115 0.02960
Rep_2390_c_1_1695 vegan > omnivore 1.50305 0.00241
Rep_2390_c_1_1696 vegan > omnivore 1.44153 0.00241
Rep_2390_c_1_1697 vegan > omnivore 1.43147 0.00241
Rep_2390_c_1_1697 vegetarian > omnivore 1.64053 0.00589

🧭 Explore Read Mapping of CGC

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