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Cluster: Rep_2390_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2390_c_1 Rep_2390_c_1_1159 1377436 1379040 - CBM50
pfam Rep_2390_c_1 Rep_2390_c_1_1160 1379299 1379748 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
pfam Rep_2390_c_1 Rep_2390_c_1_1161 1379836 1380018 - DUF4250
TC Rep_2390_c_1 Rep_2390_c_1_1162 1380086 1380436 + 2.A.78.1.1
TF Rep_2390_c_1 Rep_2390_c_1_1163 1380935 1381954 + LacI
NULL(UNKNOWN) Rep_2390_c_1 Rep_2390_c_1_1164 1382010 1383359 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2390_c_1 Rep_2390_c_1_1165 1383500 1384471 + 3.A.1.1.4
TC Rep_2390_c_1 Rep_2390_c_1_1166 1384473 1385345 + 3.A.1.1.26
pfam Rep_2390_c_1 Rep_2390_c_1_1167 1385649 1386518 + sCache_3_3
TC Rep_2390_c_1 Rep_2390_c_1_1168 1386588 1387805 + 1.B.52.2.1
NULL(UNKNOWN) Rep_2390_c_1 Rep_2390_c_1_1169 1388068 1388508 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2390_c_1 Rep_2390_c_1_1170 1388661 1389107 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2390_c_1 Rep_2390_c_1_1171 1389197 1390825 + 2.A.58.2.2
TC Rep_2390_c_1 Rep_2390_c_1_1172 1390843 1391775 + 2.A.19.5.2
CAZyme Rep_2390_c_1 Rep_2390_c_1_1173 1392148 1394904 + GH3
TC Rep_2390_c_1 Rep_2390_c_1_1174 1394996 1395844 + 3.A.1.26.7
TC Rep_2390_c_1 Rep_2390_c_1_1175 1395894 1396757 + 3.A.1.26.7
TC Rep_2390_c_1 Rep_2390_c_1_1176 1396760 1397566 + 3.A.1.25.4
Gene ID: Rep_2390_c_1_1159
Type: CAZyme
Location: 1377436 - 1379040 (-)
Gene ID: Rep_2390_c_1_1160
Type: pfam
Location: 1379299 - 1379748 (+)
Gene ID: Rep_2390_c_1_1161
Type: pfam
Location: 1379836 - 1380018 (-)
Gene ID: Rep_2390_c_1_1162
Type: TC
Location: 1380086 - 1380436 (+)
Gene ID: Rep_2390_c_1_1163
Type: TF
Location: 1380935 - 1381954 (+)
Gene ID: Rep_2390_c_1_1164
Type:
Location: 1382010 - 1383359 (+)
Gene ID: Rep_2390_c_1_1165
Type: TC
Location: 1383500 - 1384471 (+)
Gene ID: Rep_2390_c_1_1166
Type: TC
Location: 1384473 - 1385345 (+)
Gene ID: Rep_2390_c_1_1167
Type: pfam
Location: 1385649 - 1386518 (+)
Gene ID: Rep_2390_c_1_1168
Type: TC
Location: 1386588 - 1387805 (+)
Gene ID: Rep_2390_c_1_1169
Type:
Location: 1388068 - 1388508 (+)
Gene ID: Rep_2390_c_1_1170
Type:
Location: 1388661 - 1389107 (+)
Gene ID: Rep_2390_c_1_1171
Type: TC
Location: 1389197 - 1390825 (+)
Gene ID: Rep_2390_c_1_1172
Type: TC
Location: 1390843 - 1391775 (+)
Gene ID: Rep_2390_c_1_1173
Type: CAZyme
Location: 1392148 - 1394904 (+)
Gene ID: Rep_2390_c_1_1174
Type: TC
Location: 1394996 - 1395844 (+)
Gene ID: Rep_2390_c_1_1175
Type: TC
Location: 1395894 - 1396757 (+)
Gene ID: Rep_2390_c_1_1176
Type: TC
Location: 1396760 - 1397566 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2390_c_1_1159 vegan > omnivore 1.63077 0.00241
Rep_2390_c_1_1160 vegan > omnivore 15.91236 0.00241
Rep_2390_c_1_1160 vegetarian > omnivore 14.54116 0.00614
Rep_2390_c_1_1161 vegan > omnivore 16.66699 0.00241
Rep_2390_c_1_1164 vegetarian > vegan 1.05209 0.01119
Rep_2390_c_1_1167 vegan > omnivore 2.19179 0.00241
Rep_2390_c_1_1168 vegan > omnivore 2.87985 0.00241
Rep_2390_c_1_1168 vegetarian > omnivore 2.87977 0.00137
Rep_2390_c_1_1169 vegan > omnivore 2.44574 0.00241
Rep_2390_c_1_1170 vegan > omnivore 1.61636 0.00241
Rep_2390_c_1_1171 vegan > omnivore 1.40898 0.00241
Rep_2390_c_1_1172 vegan > omnivore 2.51046 0.00241
Rep_2390_c_1_1172 vegetarian > omnivore 1.54627 0.02960
Rep_2390_c_1_1173 vegan > omnivore 1.66750 0.00241
Rep_2390_c_1_1173 vegetarian > omnivore 2.28852 0.00091
Rep_2390_c_1_1176 vegetarian > omnivore 1.45040 0.00091

🧭 Explore Read Mapping of CGC

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