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Cluster: Rep_2390_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2390_c_1 Rep_2390_c_1_1064 1256666 1257661 + 8.A.5.1.3
TC Rep_2390_c_1 Rep_2390_c_1_1065 1257961 1260129 + 4.A.1.1.9
pfam Rep_2390_c_1 Rep_2390_c_1_1066 1260185 1261054 + PRD | PRD | CAT_RBD
STP Rep_2390_c_1 Rep_2390_c_1_1067 1261310 1261567 + PTS-HPr
TC Rep_2390_c_1 Rep_2390_c_1_1068 1261982 1263604 + 8.A.7.1.1
pfam Rep_2390_c_1 Rep_2390_c_1_1069 1263764 1264519 + ThiF
pfam Rep_2390_c_1 Rep_2390_c_1_1070 1264884 1265180 + DUF6110
TC Rep_2390_c_1 Rep_2390_c_1_1071 1265208 1266677 + 3.A.3.32.3
TC Rep_2390_c_1 Rep_2390_c_1_1072 1266670 1267281 + 3.A.3.32.3
TC Rep_2390_c_1 Rep_2390_c_1_1073 1267631 1268266 + 8.A.59.4.2
pfam Rep_2390_c_1 Rep_2390_c_1_1074 1268356 1268763 + DUF1292
TF Rep_2390_c_1 Rep_2390_c_1_1075 1268952 1270154 - HTH_AraC | HTH_AraC
CAZyme Rep_2390_c_1 Rep_2390_c_1_1076 1270494 1271666 + GH5_44
TC Rep_2390_c_1 Rep_2390_c_1_1077 1271740 1273128 + 2.A.2.3.3
CAZyme Rep_2390_c_1 Rep_2390_c_1_1078 1273268 1275271 + GH42
Gene ID: Rep_2390_c_1_1064
Type: TC
Location: 1256666 - 1257661 (+)
Gene ID: Rep_2390_c_1_1065
Type: TC
Location: 1257961 - 1260129 (+)
Gene ID: Rep_2390_c_1_1066
Type: pfam
Location: 1260185 - 1261054 (+)
Gene ID: Rep_2390_c_1_1067
Type: STP
Location: 1261310 - 1261567 (+)
Gene ID: Rep_2390_c_1_1068
Type: TC
Location: 1261982 - 1263604 (+)
Gene ID: Rep_2390_c_1_1069
Type: pfam
Location: 1263764 - 1264519 (+)
Gene ID: Rep_2390_c_1_1070
Type: pfam
Location: 1264884 - 1265180 (+)
Gene ID: Rep_2390_c_1_1071
Type: TC
Location: 1265208 - 1266677 (+)
Gene ID: Rep_2390_c_1_1072
Type: TC
Location: 1266670 - 1267281 (+)
Gene ID: Rep_2390_c_1_1073
Type: TC
Location: 1267631 - 1268266 (+)
Gene ID: Rep_2390_c_1_1074
Type: pfam
Location: 1268356 - 1268763 (+)
Gene ID: Rep_2390_c_1_1075
Type: TF
Location: 1268952 - 1270154 (-)
Gene ID: Rep_2390_c_1_1076
Type: CAZyme
Location: 1270494 - 1271666 (+)
Gene ID: Rep_2390_c_1_1077
Type: TC
Location: 1271740 - 1273128 (+)
Gene ID: Rep_2390_c_1_1078
Type: CAZyme
Location: 1273268 - 1275271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2390_c_1_1064 vegan > omnivore 2.25663 0.00241
Rep_2390_c_1_1066 vegan > omnivore 3.85078 0.00241
Rep_2390_c_1_1066 vegetarian > omnivore 1.70077 0.02960
Rep_2390_c_1_1067 vegan > omnivore 1.06813 0.00241
Rep_2390_c_1_1070 vegan > omnivore 1.38492 0.00241
Rep_2390_c_1_1071 vegan > omnivore 1.44516 0.00241
Rep_2390_c_1_1071 vegetarian > omnivore 1.14064 0.01041
Rep_2390_c_1_1073 vegan > omnivore 1.02025 0.00241
Rep_2390_c_1_1075 vegan > omnivore 1.83632 0.00241
Rep_2390_c_1_1076 vegan > omnivore 1.19257 0.00241
Rep_2390_c_1_1077 vegan > omnivore 2.15956 0.00241
Rep_2390_c_1_1078 vegan > omnivore 1.46356 0.00241

🧭 Explore Read Mapping of CGC

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