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Cluster: Rep_2390_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2390_c_1 Rep_2390_c_1_889 1043568 1045568 - GH43_16
CAZyme Rep_2390_c_1 Rep_2390_c_1_890 1045946 1047301 + GH43_35
TF Rep_2390_c_1 Rep_2390_c_1_891 1047534 1048328 + HTH_AraC | HTH_AraC
pfam Rep_2390_c_1 Rep_2390_c_1_892 1048311 1049558 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme Rep_2390_c_1 Rep_2390_c_1_893 1049731 1050978 + GT8
TC Rep_2390_c_1 Rep_2390_c_1_894 1051034 1053610 + 9.B.144.1.5
pfam Rep_2390_c_1 Rep_2390_c_1_895 1053845 1054285 + GtrA_DPMS_TM
CAZyme Rep_2390_c_1 Rep_2390_c_1_896 1054285 1055247 + GT2
pfam Rep_2390_c_1 Rep_2390_c_1_897 1055376 1056479 + GLF | NAD_binding_8
CAZyme Rep_2390_c_1 Rep_2390_c_1_898 1056514 1057659 + GT2
CAZyme Rep_2390_c_1 Rep_2390_c_1_899 1057740 1058723 + GT2
CAZyme Rep_2390_c_1 Rep_2390_c_1_900 1058883 1060115 + GT2
NULL(UNKNOWN) Rep_2390_c_1 Rep_2390_c_1_901 1060176 1060928 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2390_c_1 Rep_2390_c_1_902 1061360 1062844 + 9.A.11.1.1
TC Rep_2390_c_1 Rep_2390_c_1_903 1063272 1064714 + 2.A.111.1.1
Gene ID: Rep_2390_c_1_889
Type: CAZyme
Location: 1043568 - 1045568 (-)
Gene ID: Rep_2390_c_1_890
Type: CAZyme
Location: 1045946 - 1047301 (+)
Gene ID: Rep_2390_c_1_891
Type: TF
Location: 1047534 - 1048328 (+)
Gene ID: Rep_2390_c_1_892
Type: pfam
Location: 1048311 - 1049558 (-)
Gene ID: Rep_2390_c_1_893
Type: CAZyme
Location: 1049731 - 1050978 (+)
Gene ID: Rep_2390_c_1_894
Type: TC
Location: 1051034 - 1053610 (+)
Gene ID: Rep_2390_c_1_895
Type: pfam
Location: 1053845 - 1054285 (+)
Gene ID: Rep_2390_c_1_896
Type: CAZyme
Location: 1054285 - 1055247 (+)
Gene ID: Rep_2390_c_1_897
Type: pfam
Location: 1055376 - 1056479 (+)
Gene ID: Rep_2390_c_1_898
Type: CAZyme
Location: 1056514 - 1057659 (+)
Gene ID: Rep_2390_c_1_899
Type: CAZyme
Location: 1057740 - 1058723 (+)
Gene ID: Rep_2390_c_1_900
Type: CAZyme
Location: 1058883 - 1060115 (+)
Gene ID: Rep_2390_c_1_901
Type:
Location: 1060176 - 1060928 (-)
Gene ID: Rep_2390_c_1_902
Type: TC
Location: 1061360 - 1062844 (+)
Gene ID: Rep_2390_c_1_903
Type: TC
Location: 1063272 - 1064714 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2390_c_1_889 vegan > omnivore 1.88220 0.00241
Rep_2390_c_1_890 vegan > omnivore 1.62041 0.00241
Rep_2390_c_1_891 vegan > omnivore 1.05545 0.00241
Rep_2390_c_1_891 vegetarian > omnivore 1.47639 0.02960
Rep_2390_c_1_893 vegan > omnivore 1.64616 0.00241
Rep_2390_c_1_894 vegan > omnivore 1.12937 0.00241
Rep_2390_c_1_895 vegan > omnivore 1.43602 0.00241
Rep_2390_c_1_896 vegan > omnivore 2.42811 0.00241
Rep_2390_c_1_896 vegetarian > omnivore 1.00270 0.02960
Rep_2390_c_1_898 vegan > omnivore 1.23416 0.00241
Rep_2390_c_1_898 vegetarian > omnivore 1.04061 0.02960
Rep_2390_c_1_899 vegan > omnivore 2.28862 0.00241
Rep_2390_c_1_900 vegan > omnivore 1.09580 0.00241
Rep_2390_c_1_901 vegan > omnivore 1.98759 0.00241
Rep_2390_c_1_901 vegetarian > omnivore 1.22890 0.02960
Rep_2390_c_1_902 vegan > omnivore 1.17012 0.00241
Rep_2390_c_1_903 vegan > omnivore 1.32961 0.00241

🧭 Explore Read Mapping of CGC

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