dbCAN Logo

Cluster: Rep_2390_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2390_c_1 Rep_2390_c_1_716 801189 803126 - 2.A.67.4.2
TC Rep_2390_c_1 Rep_2390_c_1_717 803611 804666 - 2.A.45.2.6
CAZyme Rep_2390_c_1 Rep_2390_c_1_718 804718 806295 - GH2
TC Rep_2390_c_1 Rep_2390_c_1_719 806524 809868 - 3.A.17.1.1
Gene ID: Rep_2390_c_1_716
Type: TC
Location: 801189 - 803126 (-)
Gene ID: Rep_2390_c_1_717
Type: TC
Location: 803611 - 804666 (-)
Gene ID: Rep_2390_c_1_718
Type: CAZyme
Location: 804718 - 806295 (-)
Gene ID: Rep_2390_c_1_719
Type: TC
Location: 806524 - 809868 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2390_c_1_716 vegan > omnivore 1.08904 0.00241
Rep_2390_c_1_716 vegetarian > omnivore 1.26866 0.00105
Rep_2390_c_1_717 vegan > omnivore 1.09194 0.00241
Rep_2390_c_1_718 vegan > omnivore 1.17375 0.00241

🧭 Explore Read Mapping of CGC

← Back to Cluster List