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Cluster: Rep_2383_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2383_c_0 Rep_2383_c_0_46 45839 49090 - GH59
TF Rep_2383_c_0 Rep_2383_c_0_47 49280 50101 + HTH_AraC | HTH_AraC
TF Rep_2383_c_0 Rep_2383_c_0_48 50112 51131 - LacI
TC Rep_2383_c_0 Rep_2383_c_0_49 51148 51924 - 3.A.1.17.2
TC Rep_2383_c_0 Rep_2383_c_0_50 51914 52702 - 3.A.1.16.2
STP Rep_2383_c_0 Rep_2383_c_0_51 52677 53663 - SBP_bac_3
TC Rep_2383_c_0 Rep_2383_c_0_52 53802 54956 - 2.A.86.1.8
pfam Rep_2383_c_0 Rep_2383_c_0_53 55012 55578 - DUF305
TC Rep_2383_c_0 Rep_2383_c_0_54 55637 56995 - 2.A.66.1.32
Gene ID: Rep_2383_c_0_46
Type: CAZyme
Location: 45839 - 49090 (-)
Gene ID: Rep_2383_c_0_47
Type: TF
Location: 49280 - 50101 (+)
Gene ID: Rep_2383_c_0_48
Type: TF
Location: 50112 - 51131 (-)
Gene ID: Rep_2383_c_0_49
Type: TC
Location: 51148 - 51924 (-)
Gene ID: Rep_2383_c_0_50
Type: TC
Location: 51914 - 52702 (-)
Gene ID: Rep_2383_c_0_51
Type: STP
Location: 52677 - 53663 (-)
Gene ID: Rep_2383_c_0_52
Type: TC
Location: 53802 - 54956 (-)
Gene ID: Rep_2383_c_0_53
Type: pfam
Location: 55012 - 55578 (-)
Gene ID: Rep_2383_c_0_54
Type: TC
Location: 55637 - 56995 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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