Cluster: Rep_2383_CGC27
🧬 Cluster Details
- Gene Count: 31
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_2383
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2383_c_5 | Rep_2383_c_5_34 | 35240 | 37768 | - | 3.A.3.5.15 |
| pfam | Rep_2383_c_5 | Rep_2383_c_5_35 | 37816 | 38124 | - | Trns_repr_metal |
| NULL(UNKNOWN) | Rep_2383_c_5 | Rep_2383_c_5_36 | 38295 | 38477 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2383_c_5 | Rep_2383_c_5_37 | 38715 | 40100 | + | 2.A.66.1.13 |
| TC | Rep_2383_c_5 | Rep_2383_c_5_38 | 40152 | 40832 | - | 1.C.113.1.10 |
| TC | Rep_2383_c_5 | Rep_2383_c_5_39 | 40979 | 41617 | + | 2.A.115.2.8 |
| NULL(UNKNOWN) | Rep_2383_c_5 | Rep_2383_c_5_40 | 42083 | 42376 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | Rep_2383_c_5 | Rep_2383_c_5_41 | 42999 | 44858 | - | C44.UNW |
| TC | Rep_2383_c_5 | Rep_2383_c_5_42 | 44998 | 47103 | + | 4.A.1.1.9 |
| CAZyme | Rep_2383_c_5 | Rep_2383_c_5_43 | 47252 | 51355 | + | GH2 |
| TC | Rep_2383_c_5 | Rep_2383_c_5_44 | 51556 | 52398 | + | 1.A.16.1.3 |
| TF | Rep_2383_c_5 | Rep_2383_c_5_45 | 52489 | 53316 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2383_c_5 | Rep_2383_c_5_46 | 53440 | 57531 | + | GH2 |
| TF | Rep_2383_c_5 | Rep_2383_c_5_47 | 57539 | 58438 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2383_c_5 | Rep_2383_c_5_48 | 58593 | 60572 | + | GH31_4 |
| CAZyme | Rep_2383_c_5 | Rep_2383_c_5_49 | 60605 | 64318 | + | CBM35 |
| pfam | Rep_2383_c_5 | Rep_2383_c_5_50 | 64427 | 66685 | + | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5 |
| pfam | Rep_2383_c_5 | Rep_2383_c_5_51 | 66910 | 67203 | + | Thiamine_BP |
| TC | Rep_2383_c_5 | Rep_2383_c_5_52 | 67175 | 67954 | + | 3.A.1.17.8 |
| TC | Rep_2383_c_5 | Rep_2383_c_5_53 | 67981 | 68970 | + | 3.A.1.17.8 |
| TC | Rep_2383_c_5 | Rep_2383_c_5_54 | 69021 | 69785 | + | 3.A.1.17.13 |
| CAZyme | Rep_2383_c_5 | Rep_2383_c_5_55 | 70030 | 72402 | + | CBM9 |
| CAZyme | Rep_2383_c_5 | Rep_2383_c_5_56 | 72497 | 74020 | + | CE1 |
| pfam | Rep_2383_c_5 | Rep_2383_c_5_57 | 74088 | 75191 | - | ALGX |
| TC | Rep_2383_c_5 | Rep_2383_c_5_58 | 75209 | 76615 | - | 2.A.50.2.1 |
| CAZyme | Rep_2383_c_5 | Rep_2383_c_5_59 | 76743 | 78233 | + | GH77 |
| pfam | Rep_2383_c_5 | Rep_2383_c_5_60 | 78246 | 78467 | - | DUF2508 |
| pfam | Rep_2383_c_5 | Rep_2383_c_5_61 | 78588 | 78785 | + | BofA |
| TC | Rep_2383_c_5 | Rep_2383_c_5_62 | 78907 | 79389 | + | 1.A.54.5.1 |
| NULL(UNKNOWN) | Rep_2383_c_5 | Rep_2383_c_5_63 | 79379 | 80359 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2383_c_5 | Rep_2383_c_5_64 | 80346 | 81533 | + | 3.A.7.15.1 |
Gene ID: Rep_2383_c_5_34
Type: TC
Location: 35240 - 37768 (-)
Type: TC
Location: 35240 - 37768 (-)
Gene ID: Rep_2383_c_5_35
Type: pfam
Location: 37816 - 38124 (-)
Type: pfam
Location: 37816 - 38124 (-)
Gene ID: Rep_2383_c_5_36
Type:
Location: 38295 - 38477 (-)
Type:
Location: 38295 - 38477 (-)
Gene ID: Rep_2383_c_5_37
Type: TC
Location: 38715 - 40100 (+)
Type: TC
Location: 38715 - 40100 (+)
Gene ID: Rep_2383_c_5_38
Type: TC
Location: 40152 - 40832 (-)
Type: TC
Location: 40152 - 40832 (-)
Gene ID: Rep_2383_c_5_39
Type: TC
Location: 40979 - 41617 (+)
Type: TC
Location: 40979 - 41617 (+)
Gene ID: Rep_2383_c_5_40
Type:
Location: 42083 - 42376 (+)
Type:
Location: 42083 - 42376 (+)
Gene ID: Rep_2383_c_5_41
Type: peptidase
Location: 42999 - 44858 (-)
Type: peptidase
Location: 42999 - 44858 (-)
Gene ID: Rep_2383_c_5_42
Type: TC
Location: 44998 - 47103 (+)
Type: TC
Location: 44998 - 47103 (+)
Gene ID: Rep_2383_c_5_43
Type: CAZyme
Location: 47252 - 51355 (+)
Type: CAZyme
Location: 47252 - 51355 (+)
Gene ID: Rep_2383_c_5_44
Type: TC
Location: 51556 - 52398 (+)
Type: TC
Location: 51556 - 52398 (+)
Gene ID: Rep_2383_c_5_45
Type: TF
Location: 52489 - 53316 (+)
Type: TF
Location: 52489 - 53316 (+)
Gene ID: Rep_2383_c_5_46
Type: CAZyme
Location: 53440 - 57531 (+)
Type: CAZyme
Location: 53440 - 57531 (+)
Gene ID: Rep_2383_c_5_47
Type: TF
Location: 57539 - 58438 (-)
Type: TF
Location: 57539 - 58438 (-)
Gene ID: Rep_2383_c_5_48
Type: CAZyme
Location: 58593 - 60572 (+)
Type: CAZyme
Location: 58593 - 60572 (+)
Gene ID: Rep_2383_c_5_49
Type: CAZyme
Location: 60605 - 64318 (+)
Type: CAZyme
Location: 60605 - 64318 (+)
Gene ID: Rep_2383_c_5_50
Type: pfam
Location: 64427 - 66685 (+)
Type: pfam
Location: 64427 - 66685 (+)
Gene ID: Rep_2383_c_5_51
Type: pfam
Location: 66910 - 67203 (+)
Type: pfam
Location: 66910 - 67203 (+)
Gene ID: Rep_2383_c_5_52
Type: TC
Location: 67175 - 67954 (+)
Type: TC
Location: 67175 - 67954 (+)
Gene ID: Rep_2383_c_5_53
Type: TC
Location: 67981 - 68970 (+)
Type: TC
Location: 67981 - 68970 (+)
Gene ID: Rep_2383_c_5_54
Type: TC
Location: 69021 - 69785 (+)
Type: TC
Location: 69021 - 69785 (+)
Gene ID: Rep_2383_c_5_55
Type: CAZyme
Location: 70030 - 72402 (+)
Type: CAZyme
Location: 70030 - 72402 (+)
Gene ID: Rep_2383_c_5_56
Type: CAZyme
Location: 72497 - 74020 (+)
Type: CAZyme
Location: 72497 - 74020 (+)
Gene ID: Rep_2383_c_5_57
Type: pfam
Location: 74088 - 75191 (-)
Type: pfam
Location: 74088 - 75191 (-)
Gene ID: Rep_2383_c_5_58
Type: TC
Location: 75209 - 76615 (-)
Type: TC
Location: 75209 - 76615 (-)
Gene ID: Rep_2383_c_5_59
Type: CAZyme
Location: 76743 - 78233 (+)
Type: CAZyme
Location: 76743 - 78233 (+)
Gene ID: Rep_2383_c_5_60
Type: pfam
Location: 78246 - 78467 (-)
Type: pfam
Location: 78246 - 78467 (-)
Gene ID: Rep_2383_c_5_61
Type: pfam
Location: 78588 - 78785 (+)
Type: pfam
Location: 78588 - 78785 (+)
Gene ID: Rep_2383_c_5_62
Type: TC
Location: 78907 - 79389 (+)
Type: TC
Location: 78907 - 79389 (+)
Gene ID: Rep_2383_c_5_63
Type:
Location: 79379 - 80359 (+)
Type:
Location: 79379 - 80359 (+)
Gene ID: Rep_2383_c_5_64
Type: TC
Location: 80346 - 81533 (+)
Type: TC
Location: 80346 - 81533 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
V9D3004
Species
V9D3004 sp902493385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.