Cluster: Rep_2383_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2383
- CGC Family ID: CGCFAM_01544
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2383_c_0 | Rep_2383_c_0_29 | 26518 | 27702 | - | 3.A.1.122.2 |
| TC | Rep_2383_c_0 | Rep_2383_c_0_30 | 27699 | 28388 | - | 3.A.1.122.2 |
| pfam | Rep_2383_c_0 | Rep_2383_c_0_31 | 28376 | 30283 | - | HlyD_3 |
| NULL(UNKNOWN) | Rep_2383_c_0 | Rep_2383_c_0_32 | 30280 | 30762 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2383_c_0 | Rep_2383_c_0_33 | 30879 | 32024 | - | GH18 |
Gene ID: Rep_2383_c_0_29
Type: TC
Location: 26518 - 27702 (-)
Type: TC
Location: 26518 - 27702 (-)
Gene ID: Rep_2383_c_0_30
Type: TC
Location: 27699 - 28388 (-)
Type: TC
Location: 27699 - 28388 (-)
Gene ID: Rep_2383_c_0_31
Type: pfam
Location: 28376 - 30283 (-)
Type: pfam
Location: 28376 - 30283 (-)
Gene ID: Rep_2383_c_0_32
Type:
Location: 30280 - 30762 (-)
Type:
Location: 30280 - 30762 (-)
Gene ID: Rep_2383_c_0_33
Type: CAZyme
Location: 30879 - 32024 (-)
Type: CAZyme
Location: 30879 - 32024 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
V9D3004
Species
V9D3004 sp902493385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.