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Cluster: Rep_2383_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2383_c_1 Rep_2383_c_1_91 108823 110229 + 3.B.1.1.5
pfam Rep_2383_c_1 Rep_2383_c_1_92 110247 110993 + OAD_gamma
TC Rep_2383_c_1 Rep_2383_c_1_93 111007 111372 + 3.B.1.1.2
TC Rep_2383_c_1 Rep_2383_c_1_94 111409 112569 + 3.B.1.1.3
TC Rep_2383_c_1 Rep_2383_c_1_95 112601 114028 + 3.B.1.1.6
pfam Rep_2383_c_1 Rep_2383_c_1_96 114157 115614 - Chromate_transp | Chromate_transp
TF Rep_2383_c_1 Rep_2383_c_1_97 115642 116406 - HTH_AraC | HTH_AraC
CAZyme Rep_2383_c_1 Rep_2383_c_1_98 116609 119782 + GH141
CAZyme Rep_2383_c_1 Rep_2383_c_1_99 119808 121763 + CBM6 | GH43_29
CAZyme Rep_2383_c_1 Rep_2383_c_1_100 121862 123730 + GH43_29
STP Rep_2383_c_1 Rep_2383_c_1_101 123807 124232 + Sigma70_r4
TC Rep_2383_c_1 Rep_2383_c_1_102 124256 125602 + 3.A.5.1.1
Gene ID: Rep_2383_c_1_91
Type: TC
Location: 108823 - 110229 (+)
Gene ID: Rep_2383_c_1_92
Type: pfam
Location: 110247 - 110993 (+)
Gene ID: Rep_2383_c_1_93
Type: TC
Location: 111007 - 111372 (+)
Gene ID: Rep_2383_c_1_94
Type: TC
Location: 111409 - 112569 (+)
Gene ID: Rep_2383_c_1_95
Type: TC
Location: 112601 - 114028 (+)
Gene ID: Rep_2383_c_1_96
Type: pfam
Location: 114157 - 115614 (-)
Gene ID: Rep_2383_c_1_97
Type: TF
Location: 115642 - 116406 (-)
Gene ID: Rep_2383_c_1_98
Type: CAZyme
Location: 116609 - 119782 (+)
Gene ID: Rep_2383_c_1_99
Type: CAZyme
Location: 119808 - 121763 (+)
Gene ID: Rep_2383_c_1_100
Type: CAZyme
Location: 121862 - 123730 (+)
Gene ID: Rep_2383_c_1_101
Type: STP
Location: 123807 - 124232 (+)
Gene ID: Rep_2383_c_1_102
Type: TC
Location: 124256 - 125602 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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