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Cluster: Rep_2378_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2378_c_0 Rep_2378_c_0_1718 1768745 1770376 - GH13_36
TC Rep_2378_c_0 Rep_2378_c_0_1719 1770466 1771335 - 3.A.1.1.27
TC Rep_2378_c_0 Rep_2378_c_0_1720 1771335 1772720 - 3.A.1.1.27
STP Rep_2378_c_0 Rep_2378_c_0_1721 1772814 1774118 - SBP_bac_1
TC Rep_2378_c_0 Rep_2378_c_0_1722 1774274 1775980 - 8.A.59.2.1
TF Rep_2378_c_0 Rep_2378_c_0_1723 1775983 1777497 - HTH_AraC | HTH_AraC
CAZyme Rep_2378_c_0 Rep_2378_c_0_1724 1777636 1781409 - GH77 | GT35
TF Rep_2378_c_0 Rep_2378_c_0_1725 1781547 1782425 + HTH_AraC | HTH_AraC
TC Rep_2378_c_0 Rep_2378_c_0_1726 1782418 1783245 - 3.A.1.15.11
TC Rep_2378_c_0 Rep_2378_c_0_1727 1783247 1783969 - 3.A.1.15.2
TC Rep_2378_c_0 Rep_2378_c_0_1728 1783969 1784931 - 3.A.1.15.11
Gene ID: Rep_2378_c_0_1718
Type: CAZyme
Location: 1768745 - 1770376 (-)
Gene ID: Rep_2378_c_0_1719
Type: TC
Location: 1770466 - 1771335 (-)
Gene ID: Rep_2378_c_0_1720
Type: TC
Location: 1771335 - 1772720 (-)
Gene ID: Rep_2378_c_0_1721
Type: STP
Location: 1772814 - 1774118 (-)
Gene ID: Rep_2378_c_0_1722
Type: TC
Location: 1774274 - 1775980 (-)
Gene ID: Rep_2378_c_0_1723
Type: TF
Location: 1775983 - 1777497 (-)
Gene ID: Rep_2378_c_0_1724
Type: CAZyme
Location: 1777636 - 1781409 (-)
Gene ID: Rep_2378_c_0_1725
Type: TF
Location: 1781547 - 1782425 (+)
Gene ID: Rep_2378_c_0_1726
Type: TC
Location: 1782418 - 1783245 (-)
Gene ID: Rep_2378_c_0_1727
Type: TC
Location: 1783247 - 1783969 (-)
Gene ID: Rep_2378_c_0_1728
Type: TC
Location: 1783969 - 1784931 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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