Cluster: Rep_2375_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2375
- CGC Family ID: CGCFAM_02166
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2375_c_86 | Rep_2375_c_86_6 | 6736 | 8013 | + | GT4 |
| TC | Rep_2375_c_86 | Rep_2375_c_86_7 | 8017 | 8838 | + | 3.A.1.103.4 |
| TC | Rep_2375_c_86 | Rep_2375_c_86_8 | 8872 | 10107 | + | 3.A.1.103.4 |
| CAZyme | Rep_2375_c_86 | Rep_2375_c_86_9 | 10125 | 11165 | + | GT4 |
| pfam | Rep_2375_c_86 | Rep_2375_c_86_10 | 11307 | 12377 | + | NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix |
| CAZyme | Rep_2375_c_86 | Rep_2375_c_86_11 | 12417 | 14915 | + | GT2 | GT2 |
Gene ID: Rep_2375_c_86_6
Type: CAZyme
Location: 6736 - 8013 (+)
Type: CAZyme
Location: 6736 - 8013 (+)
Gene ID: Rep_2375_c_86_7
Type: TC
Location: 8017 - 8838 (+)
Type: TC
Location: 8017 - 8838 (+)
Gene ID: Rep_2375_c_86_8
Type: TC
Location: 8872 - 10107 (+)
Type: TC
Location: 8872 - 10107 (+)
Gene ID: Rep_2375_c_86_9
Type: CAZyme
Location: 10125 - 11165 (+)
Type: CAZyme
Location: 10125 - 11165 (+)
Gene ID: Rep_2375_c_86_10
Type: pfam
Location: 11307 - 12377 (+)
Type: pfam
Location: 11307 - 12377 (+)
Gene ID: Rep_2375_c_86_11
Type: CAZyme
Location: 12417 - 14915 (+)
Type: CAZyme
Location: 12417 - 14915 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.