Cluster: Rep_2375_CGC30
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2375
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2375_c_297 | Rep_2375_c_297_3 | 2354 | 5104 | - | 3.A.1.122.13 |
| NULL(UNKNOWN) | Rep_2375_c_297 | Rep_2375_c_297_4 | 5283 | 5867 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2375_c_297 | Rep_2375_c_297_5 | 5953 | 7767 | - | GH2 |
| TC | Rep_2375_c_297 | Rep_2375_c_297_6 | 7791 | 9173 | - | 2.A.2.3.1 |
| TC | Rep_2375_c_297 | Rep_2375_c_297_7 | 9312 | 10169 | - | 3.A.1.7.5 |
| TC | Rep_2375_c_297 | Rep_2375_c_297_8 | 10162 | 11025 | - | 3.A.1.7.5 |
| TC | Rep_2375_c_297 | Rep_2375_c_297_9 | 11111 | 12010 | - | 3.A.1.7.5 |
| TC | Rep_2375_c_297 | Rep_2375_c_297_10 | 12243 | 12791 | - | 2.A.51.1.6 |
Gene ID: Rep_2375_c_297_3
Type: TC
Location: 2354 - 5104 (-)
Type: TC
Location: 2354 - 5104 (-)
Gene ID: Rep_2375_c_297_4
Type:
Location: 5283 - 5867 (-)
Type:
Location: 5283 - 5867 (-)
Gene ID: Rep_2375_c_297_5
Type: CAZyme
Location: 5953 - 7767 (-)
Type: CAZyme
Location: 5953 - 7767 (-)
Gene ID: Rep_2375_c_297_6
Type: TC
Location: 7791 - 9173 (-)
Type: TC
Location: 7791 - 9173 (-)
Gene ID: Rep_2375_c_297_7
Type: TC
Location: 9312 - 10169 (-)
Type: TC
Location: 9312 - 10169 (-)
Gene ID: Rep_2375_c_297_8
Type: TC
Location: 10162 - 11025 (-)
Type: TC
Location: 10162 - 11025 (-)
Gene ID: Rep_2375_c_297_9
Type: TC
Location: 11111 - 12010 (-)
Type: TC
Location: 11111 - 12010 (-)
Gene ID: Rep_2375_c_297_10
Type: TC
Location: 12243 - 12791 (-)
Type: TC
Location: 12243 - 12791 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.