Cluster: Rep_2375_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2375
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2375_c_52 | Rep_2375_c_52_5 | 2860 | 4242 | + | 2.A.66.1.33 |
| CAZyme | Rep_2375_c_52 | Rep_2375_c_52_6 | 4301 | 5956 | + | GH3 |
| sulfatase | Rep_2375_c_52 | Rep_2375_c_52_7 | 6033 | 6527 | + | S1_7 |
| TC | Rep_2375_c_52 | Rep_2375_c_52_8 | 6569 | 7900 | + | 2.A.66.1.37 |
| TC | Rep_2375_c_52 | Rep_2375_c_52_9 | 7915 | 9663 | + | 3.A.1.106.2 |
| pfam | Rep_2375_c_52 | Rep_2375_c_52_10 | 9682 | 10563 | + | ATP_bind_3 |
| TC | Rep_2375_c_52 | Rep_2375_c_52_11 | 10640 | 11314 | + | 1.A.16.2.4 |
Gene ID: Rep_2375_c_52_5
Type: TC
Location: 2860 - 4242 (+)
Type: TC
Location: 2860 - 4242 (+)
Gene ID: Rep_2375_c_52_6
Type: CAZyme
Location: 4301 - 5956 (+)
Type: CAZyme
Location: 4301 - 5956 (+)
Gene ID: Rep_2375_c_52_7
Type: sulfatase
Location: 6033 - 6527 (+)
Type: sulfatase
Location: 6033 - 6527 (+)
Gene ID: Rep_2375_c_52_8
Type: TC
Location: 6569 - 7900 (+)
Type: TC
Location: 6569 - 7900 (+)
Gene ID: Rep_2375_c_52_9
Type: TC
Location: 7915 - 9663 (+)
Type: TC
Location: 7915 - 9663 (+)
Gene ID: Rep_2375_c_52_10
Type: pfam
Location: 9682 - 10563 (+)
Type: pfam
Location: 9682 - 10563 (+)
Gene ID: Rep_2375_c_52_11
Type: TC
Location: 10640 - 11314 (+)
Type: TC
Location: 10640 - 11314 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.